LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst2g03525	ATGTCCGGCGGCGCTGGACCTCCGCCGCAGCATACCAAGCCGGATGATTCCGGCGTCCCTATCCGGCCTCCGTTAAAGCGCCACCTCGCATTTGCGTCGATGAAGCCGTCGTTCGCTCAGCCGGATGAGTACCATAGCTTCTCCTCCTCCTCCGGTGCTCCTGACTCCGGCAGGAAACTCGCCGCCGATCAACAGGCTGAAGTCGTTGTTGTTAGATCTCCGCACATTAAGAGGAAGGGTGGAATGACTAATATTGAAGGAGACTCGCAAAAGCTTAGTAATGTTCCTGGATCAGCAAACGCAGCAAGTAGTCCTTTCAAAACTCCAGTGTCGTCCAAAGGGGGAAGGACGCATGCTAAGTCAAAGGTTTCCAAAGAAGGAATGCAATGCCCTCAGACTCCCATCTCCAATTCTGGTTCCCCATCTCCTCTTACTCCTGCTGGAAGCTGTCGCTATGACAACTCCTTAGGTATGTTGACAAAAAAGTTTGTCAATTTGGTAAAGCATTCAGAAGATGGCAATCTTGACCTAAATCAAGCAGCAGAAACTTTGGAGGTGAAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAACAGAATCTTCTTCCGGTGACGTGGATGGTGATATCTCGATGCTTAAGGAAGAAGTTGAGAGACTCTCCTTGGAAGAGCATAGATTAGATGACCGAATAAGGGAAATGCAAGAAAGGCTTAGGAGTTTGAGCGAAGATGAAAATAAGCAGAAGTTCCTTTTTGTGACTGAAGAAGATATTAAGGCCGTACCTTGCTTCCAGAATGAAACCCTGATAGCAATTAAAGCTCCACATGGAACCACCCTAGAAGTCCCTGATCCTGAGGAAGCTGTTGACTATCTGCAGAGGAGATATAGGATCATTCTTAGAAGTACTATGGGGCCCATTGATGTTTACCTTATCAGTCAATTCGAAGAGAGATTTGAAGAGATAAATGGTCCTGAGCCCCCTGTGAGCCTCCCGCTTCCTTCGAGTTCAGGGTCCAATGAACCACCAGTGGCAGAAACAGTTCCTGCGGAGTGCAGTGCAAAAGGACTAGAACCTCAACCTCAGATCCCCTCTCACACGTACTCTGATCTGAACACATCACAAGACTTTGGTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGACATTAGCATAACAGATATGTGGAGAACAGATTTGTTGATTGGAATGGAGTAG	1311	0.4668	MSGGAGPPPQHTKPDDSGVPIRPPLKRHLAFASMKPSFAQPDEYHSFSSSSGAPDSGRKLAADQQAEVVVVRSPHIKRKGGMTNIEGDSQKLSNVPGSANAASSPFKTPVSSKGGRTHAKSKVSKEGMQCPQTPISNSGSPSPLTPAGSCRYDNSLGMLTKKFVNLVKHSEDGNLDLNQAAETLEVKKRRIYDITNVLEGIGLIEKKLKNRIHWKGTESSSGDVDGDISMLKEEVERLSLEEHRLDDRIREMQERLRSLSEDENKQKFLFVTEEDIKAVPCFQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEERFEEINGPEPPVSLPLPSSSGSNEPPVAETVPAECSAKGLEPQPQIPSHTYSDLNTSQDFGGGMMKIVPSDADNDADYWLLSDADISITDMWRTDLLIGME	436

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Arst2g03525	436	SUPERFAMILY	"Winged helix" DNA-binding domain	151	214	IPR036390	-
Arst2g03525	436	PANTHER	TRANSCRIPTION FACTOR E2F	95	427	IPR015633	GO:0000978\|GO:0006357
Arst2g03525	436	MobiDBLite	consensus disorder prediction	86	117	-	-
Arst2g03525	436	MobiDBLite	consensus disorder prediction	344	390	-	-
Arst2g03525	436	SMART	E2F_TDP_2	151	216	IPR003316	GO:0005667\|GO:0006355
Arst2g03525	436	Gene3D	-	222	332	-	-
Arst2g03525	436	MobiDBLite	consensus disorder prediction	126	146	-	-
Arst2g03525	436	Gene3D	-	145	218	IPR036388	-
Arst2g03525	436	CDD	E2F_DD	231	332	IPR032198	GO:0046983
Arst2g03525	436	Pfam	E2F transcription factor CC-MB domain	231	331	IPR032198	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst2g03525	Arst-Chr2	92064552	92069013	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst2g03525	17	430	E2F-DP Transcription Factor Family	AT2G36010	57.110	6.66e-157	451

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	E2F-DP	Arst2g03525		E2F_CC-MB	1.5e-33	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst2g03525	K06620		-	gmx:100811762	595.89

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