Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g03482 ATGGATAATGAAATTGAAGTTCCTCAATATTTCATATGTCCAATTTCACTTCAAATCATGAAGGATCCTGTGATTGCCATAACAGGAATCACATATGATAGAGAAAGCATTGAGAAATGGCTTTTCAAGAACAAGAACACAACATGTCCAGTTACCAAAATGCCCCTACCAAATGATTCTGATCTTACACCAAACCATACCCTTCGCCGTTTGATCCAAGCATGGTGCACTCAAAATTCTTCACTGGGAATTGATAGAATCCCAACACCAAAGCCCCCACTTAACAAAGTTCAAGTTTTGAAGCTCCTTAAGGATCTTAAGGACCCAAGATTGAAGATCAAGAGTTTAAGGCAATTGGAGCTTCTTGCAACTGAAAATGAGAGGAACAAGAAGTGTTTGCTTGATTCTGGTGTCCCAAAAGCCATGATCATGTTCATATTGGATTGTTACAAAAAGGGTATCAATCAAATTGGTGAAGGTATTGAAGAAGCTCTTAGTTTGTTACAATTTGTTAAGGTTTCTTCCGAGGATGTTAAGATTCTTATGTCCGAGAATGTTTTTGATTTGGTGTTGGATTCTCTAACATGGCTTCTGGGGTGCGATTTTTCGGAGAATTCGGCGACTGTAAAATCACAAGCTGTTCTAGTGATCAAGAACTTGATCCAAAGGGGTGATTCAAGTGTTATTCAGAGGCTTAAATTTGAGTTCTTTGAGAAGATTGTGAAGGTTTTGAGAAATGGTGTTGTAACACAACAAGGTATTAGCGGCGCTTTGAAAGTGTTGCTAAGTGCTTGTGCGTATGGAAGAAACAGGATCATGATGGTGGAATGTGGTGCAGTTTTTGAGATGATTGAGATTGAAATGAGAACACCTGAGAAGATAATCACTGAATTAACAATGTCTATTCTGTTTCATCTATGTTCATGTGCTAGTGGAAGAGCTCAATTCTTGTGTCACAAAGGTTCAATGGCGGTTTTGACTGAAAGGATTTTGAAGGTTTCAGCGGCGGTTGATGATAGAGCTATAATTATTCTATCATTGATATCCAAATTCTCTGCTACAAATTTGGTGCTTCAAGAGATGTTGAAGGTTGGAACTGTTGCAAAGCTTTGTCTGGTTCTTCAGAGTGATCATGCAAAGTACATCAAAGAAAAAGCAATGGAAATTATTAAGAATCATTCTGAGGTTTGGAGGAACTCTCCTTGTTTTCCTGATAAGTCTTCTTTTTTTTGGCAAGTTTGCATAAGTGAATTAATTAATTAA 1263 0.3753 MDNEIEVPQYFICPISLQIMKDPVIAITGITYDRESIEKWLFKNKNTTCPVTKMPLPNDSDLTPNHTLRRLIQAWCTQNSSLGIDRIPTPKPPLNKVQVLKLLKDLKDPRLKIKSLRQLELLATENERNKKCLLDSGVPKAMIMFILDCYKKGINQIGEGIEEALSLLQFVKVSSEDVKILMSENVFDLVLDSLTWLLGCDFSENSATVKSQAVLVIKNLIQRGDSSVIQRLKFEFFEKIVKVLRNGVVTQQGISGALKVLLSACAYGRNRIMMVECGAVFEMIEIEMRTPEKIITELTMSILFHLCSCASGRAQFLCHKGSMAVLTERILKVSAAVDDRAIIILSLISKFSATNLVLQEMLKVGTVAKLCLVLQSDHAKYIKEKAMEIIKNHSEVWRNSPCFPDKSSFFWQVCISELIN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g03482 420 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Arst2g03482 420 SUPERFAMILY ARM repeat 99 393 IPR016024 -
Arst2g03482 420 Gene3D - 96 400 IPR011989 -
Arst2g03482 420 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Arst2g03482 420 CDD RING-Ubox_WDSUB1-like 8 65 - -
Arst2g03482 420 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Arst2g03482 420 Pfam U-box domain 7 80 IPR003613 GO:0004842|GO:0016567
Arst2g03482 420 PANTHER WDSAM1 PROTEIN 4 404 IPR045185 GO:0061630
Arst2g03482 420 SUPERFAMILY RING/U-box 5 85 - -
Arst2g03482 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g03482 Arst-Chr2 91681875 91683200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g03482 2 403 U-box Gene Family AT3G11840 41.892 1.34e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g03482 - - lja:Lj0g3v0014579.1 538.495