Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g03353 ATGTTTAGACAAAGCAAGATGCTTACAAGTTTTGACAATATTATTACTGCAGCAAGGATGGATACTGGCATAAAGCATGCTAACATTGTCAAGGTTATAGGTCGCACTGGGTCAAGAGGGCAAGTGACCCAGGTTAGAGTCAAGTTTCTGGATGATCAGAACCGCCACATCATGAGGAATGTGAAGGGACCAATGAGAGAAGGTGACATTCTCACCCTACTCGAGTCTCAGAGAGAAGCAAGAAGGTTGCGCTTGACTGAAATTTTGGAGACGAAAACTAAATTTTAG 288 0.4271 MFRQSKMLTSFDNIITAARMDTGIKHANIVKVIGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPMREGDILTLLESQREARRLRLTEILETKTKF 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g03353 95 FunFam 40S ribosomal protein S28 17 84 - -
Arst2g03353 95 CDD S1_S28E 25 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
Arst2g03353 95 Pfam Ribosomal protein S28e 24 83 IPR000289 GO:0003735|GO:0005840|GO:0006412
Arst2g03353 95 SUPERFAMILY Nucleic acid-binding proteins 21 84 IPR012340 -
Arst2g03353 95 Gene3D - 17 84 IPR012340 -
Arst2g03353 95 Hamap 30S ribosomal protein S28e [rps28e]. 20 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
Arst2g03353 95 PANTHER 40S RIBOSOMAL PROTEIN S28 20 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g03353 Arst-Chr2 90711459 90713003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g03353 20 84 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 81.538 2.11e-32 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g03353 K02979 - vri:117919632 117.087