Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g03326 ATGAGAACTTCTTGGGCAGATTCTGCTGACAATTCAGCCACTCGTTCTTCCAATACCCATGCGCAGTCTAACCGGGCTGCATATGTTCCGCCTCATCTTCGCAACCGGCAAATGACTTCTGAGCCTCCTGTACCATCGAATTCAGCAGCTGCTTTGCCAGCTAATGATCGGTCGAGTTATGGTGGTCCAACTGCTTCTTCTTATGGGGGAAGTTCCTTTAATAAGCCTGATTTCGGGCGGCAAGGATATGGCTCTGGTTTTCAGACCGGTGGTGGTGGTGGTGGTGCCTGGAACAACAATAGAGGAGGAGGGAGGGACCGTGGAAGGCGCGAGGCGAACCCTTTTGAGAATGACGATGCTGCGGATCAGTCAATTGGTGAGCAGGAAAACACAGGGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGAGAAAATGTGCCTCCACCTGTGAATACATTTGCAGAGATTGACTTGGGAGAGACATTGAATCAGAATATAAAGCGCTGCAAGTATGTGAAGCCAACTCCGGTACAGAGGTATGCCATACCGATATCTCTTGCTGGACGAGATTTGATGGCTTGTGCTCAGACAGGGTCAGGAAAAACTGCTGCCTTTTGCTTCCCTATTATAAGTGGAATAATGAGGGAGCCATTTGTTCAAAGACCCCGTGTAGGACGAACTGCTTACCCACTGGCACTTATCCTCTCCCCTACTAGGGAGCTTTCGTGCCAGATACATGATGAGGCCAAAAAATTTTCTTACCAGACTGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCACCAATCAACCAACAGCTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTTGCAACTCCGGGGCGATTGGTAGATTTGCTTGAGAGGGCTAGGGTATCACTGCAGATGATAAGATATTTGGCTCTCGATGAGGCAGATCGTATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATTGTTGAACAAATGGACATGCCTCCACCTGGCATGAGGCAGACACTGCTCTTCAGTGCAACATTTCCAAAAGAGATACAGCGACTTGCATCGGATTTTCTTTCAAGCTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGACTTAATTGCTCAGAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAACTGGTATTGATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCACTTGAACACTGCTTGTGTGTCAATGGATTTCCTGCAACTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGATCATTCAAGAGCGGAAACACACCAATTTTAGTGGCGACGGATGTTGCAGCTCGTGGTCTTGATATTCCAAGGGTGGCACATGTGGTAAACTTTGATCTTCCCAATGACATCGATGATTATGTGCATCGGATAGGAAGAACCGGTCGAGCTGGTAAAATGGGGTTGGCCACAGCCTTCTTCAATGAGAGTAATTTGTCCCTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCGAATCAAGAAGTACCTGCTTGGCTCACACGTTATGCAGCTAAGGCTTCTTACGGCGGTGGCAACAGAAACAGGCGCACAGGTGGATCCCGTTTCGGCGGCCGCGATTTCAGGAGGGAGGGCTCGTTCAACAAAGGAACAGATTACTATGGAGGAGGAGGAACTGGTGGGCATGGGGTTCCGGGCAGTTATGGCGGAGGATATGGTCAAGGCGTGACAAGTGCTTGGGATTAA 1839 0.4796 MRTSWADSADNSATRSSNTHAQSNRAAYVPPHLRNRQMTSEPPVPSNSAAALPANDRSSYGGPTASSYGGSSFNKPDFGRQGYGSGFQTGGGGGGAWNNNRGGGRDRGRREANPFENDDAADQSIGEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGETLNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREPFVQRPRVGRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGIDGKQGLTLVFVETKKGADALEHCLCVNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAAKASYGGGNRNRRTGGSRFGGRDFRREGSFNKGTDYYGGGGTGGHGVPGSYGGGYGQGVTSAWD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g03326 612 CDD SF2_C_DEAD 382 518 - -
Arst2g03326 612 FunFam ATP-dependent RNA helicase RhlB 373 552 - -
Arst2g03326 612 MobiDBLite consensus disorder prediction 39 74 - -
Arst2g03326 612 Gene3D - 111 372 IPR027417 -
Arst2g03326 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 524 IPR027417 -
Arst2g03326 612 MobiDBLite consensus disorder prediction 1 128 - -
Arst2g03326 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 548 IPR001650 -
Arst2g03326 612 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 123 548 - -
Arst2g03326 612 Pfam Helicase conserved C-terminal domain 395 509 IPR001650 -
Arst2g03326 612 FunFam Probable ATP-dependent RNA helicase DDX4 118 372 - -
Arst2g03326 612 CDD DEADc_DDX3_DDX4 156 376 IPR044763 GO:0003724|GO:0005524
Arst2g03326 612 Gene3D - 373 553 IPR027417 -
Arst2g03326 612 MobiDBLite consensus disorder prediction 103 117 - -
Arst2g03326 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Arst2g03326 612 Pfam DEAD/DEAH box helicase 179 359 IPR011545 GO:0003676|GO:0005524
Arst2g03326 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 370 IPR014001 -
Arst2g03326 612 MobiDBLite consensus disorder prediction 1 25 - -
Arst2g03326 612 SMART ultradead3 174 385 IPR014001 -
Arst2g03326 612 SMART helicmild6 428 509 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g03326 Arst-Chr2 90576937 90581136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g03326 153 541 Eukaryotic Initiation Factors Gene Family AT3G19760 31.633 1.77e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g03326 K11594 - gmx:100818326 952.584