Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g03188 ATGTCGTTTAGGAGTATAATCTTTGATATGAAGGGTTTGAGATCCAGGTCACAATCACACCACAGAGATGGTGTTGGTGGTGTTGTTAGTGTTAGTGAGGGTGGTGGTTTGGTGGTTCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCACCTGAGCTATTGAGGGATGTGCTCTTGAGGATTGAGGCCTCTGAAGATGCCTGGCCTGCCCGGAAACATGTCGTTGCCTGTGCCGGCGTATGTCGCAGCTGGAGGGAGATCATGAAGGAAATTGTCAAGTCCCCTCAAATTTCCAGCAAGCTCACATTCCCAATCTCATTGAAGCAGCCTGGTCCAAGAGATTCTCTTCTCCAGTGTTATATTAAACGCAATCGTAGTAATCAAACATATTATCTGTACCTTGGTTTAAATCAAGCCTCAACTGATGATGGAAAGTTCCTTCTTGCTGCACGCAAGTGTCGTCGTGCAACTCACACCGACTATATCATCTCTCTTAACTGCGACGACGTATCAAGAGGGAGTAGCACCTATATTGGAAAACTCAGATCAAACTTTCTGGGGACTAAGTTCACCATATATGATGCGCACCCTCCACTTTGTGGAGCTTCCAAAGTTACAAAGTCTCGTTCCACCAGGCTGGTTAGTCTTAAGCAAGTGTCTCCAAGAGTTCCTGCCGGCAACTATCCCATTGCGCATGTTTCGTATGATCTGAATGTTTTGGGATCCAGCAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCCGCATCGGCTGTTGAACCAGGAGGTGTAGCTCCAACACAGACTCATTTTCTTCATAGCCGAATTGAAACTTCTCCATCTATTCCCTTTTTTAGATCAAAATCAACCCGTGTCGACAATCTCCAACTGGTTCCTTCGACTACTCAAAACGAGGGAATGCTTGTGTTAAGAAACAAGTCCCCTAGGTGGCATGAACAACTCCAGTGCTGGTGTTTGAACTTCAATGGACGAGTGACAGTAGCTTCGGTTAAAAACTTTCAGCTGGTTGCATCACCGAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAAGATGTATTCACCATGGATTACCAGTATCCAATCTCTGCCTTCGAAGCATTCGCAATTTGCCTTAGTAGCTTTGACACCAAGATTGCTTGTGAATGA 1209 0.4533 MSFRSIIFDMKGLRSRSQSHHRDGVGGVVSVSEGGGLVVLDGLKQSCWANMPPELLRDVLLRIEASEDAWPARKHVVACAGVCRSWREIMKEIVKSPQISSKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLYLGLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTIYDAHPPLCGASKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSSRGPRIMQCVMDAIPASAVEPGGVAPTQTHFLHSRIETSPSIPFFRSKSTRVDNLQLVPSTTQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g03188 402 CDD F-box_AtTLP-like 48 92 - -
Arst2g03188 402 PANTHER TUBBY-RELATED 41 400 - -
Arst2g03188 402 ProSitePatterns Tub family signature 2. 387 402 IPR018066 -
Arst2g03188 402 FunFam Tubby-like F-box protein 105 402 - -
Arst2g03188 402 SUPERFAMILY Tubby C-terminal domain-like 97 402 IPR025659 -
Arst2g03188 402 Gene3D Tubby Protein; Chain A 105 402 IPR025659 -
Arst2g03188 402 SUPERFAMILY F-box domain 42 91 IPR036047 GO:0005515
Arst2g03188 402 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Arst2g03188 402 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Arst2g03188 402 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Arst2g03188 402 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Arst2g03188 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Arst2g03188 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Arst2g03188 402 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Arst2g03188 402 Pfam F-box domain 48 94 IPR001810 GO:0005515
Arst2g03188 402 Pfam Tub family 109 397 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g03188 Arst-Chr2 89519938 89523858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g03188 1 402 TUB Transcription Factor Family AT2G47900 72.993 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Arst2g03188 Tub 3.1e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g03188 K19600 - gmx:100809257 710.679