Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst2g03040 | ATGGTTCGAGGGAAGACTCAGATGAGACGCATAGAAAACGCCACAAGCAGGCAAGTGACGTTTTCAAAGCGCCGCAATGGGTTGCTTAAGAAAGCGTTTGAGCTTTCTGTTCTTTGCGATGCTCAGGTTGGTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGAGATAATTGAAAGATATCGCAAGCATACAAAGGATACTCCACCAGCAGCCAAATCAGCTGAACAGAATGTGCAGAATTTGAAGCAAGAAGCAGCAACCTTGATGAAAAAGATTGACATTCTTGAAGCCGCAAAAAGGAAATTCTTGGGAGAAGGTTTAGGGTCATGCAGCATTGAAGAACTGATACAGATAGAACAACAATTGGAGAAGAGTGTAAGCATTGTTAGAGCAAGAAAGACTCAGCTTTACAAGGAACAAATTGAGCAACTTAAAGAAAAGGAAAAAACCCTAATGGATGAAAATGCCATGCTCTATGACAAGGGTAAAGATAATATGGTTCAAAATCTAGCAACAAATAAAACAAATAATAAGGATCAGAGAGAGAATCAAGCTCAACCCTATGCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACCGAATTGTTCATTGGACTTCCTGAAACAAGAACAAGGCGCATGTCTCCTACAAATTAA | 684 | 0.405 | MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVGLIIFSPRGKLYEFASSSMQEIIERYRKHTKDTPPAAKSAEQNVQNLKQEAATLMKKIDILEAAKRKFLGEGLGSCSIEELIQIEQQLEKSVSIVRARKTQLYKEQIEQLKEKEKTLMDENAMLYDKGKDNMVQNLATNKTNNKDQRENQAQPYAESSSPSSDVETELFIGLPETRTRRMSPTN | 227 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst2g03040 | 227 | ProSiteProfiles | K-box domain profile. | 87 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Arst2g03040 | 227 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 188 | - | - | |
Arst2g03040 | 227 | Gene3D | - | 14 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Arst2g03040 | 227 | Pfam | K-box region | 83 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Arst2g03040 | 227 | Coils | Coil | 80 | 107 | - | - | |
Arst2g03040 | 227 | MobiDBLite | consensus disorder prediction | 182 | 208 | - | - | |
Arst2g03040 | 227 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Arst2g03040 | 227 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Arst2g03040 | 227 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Arst2g03040 | 227 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Arst2g03040 | 227 | Coils | Coil | 143 | 170 | - | - | |
Arst2g03040 | 227 | CDD | MADS_MEF2_like | 3 | 75 | IPR033896 | GO:0000977|GO:0045944 | |
Arst2g03040 | 227 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Arst2g03040 | 227 | SUPERFAMILY | SRF-like | 3 | 74 | IPR036879 | GO:0003677|GO:0046983 | |
Arst2g03040 | 227 | FunFam | MADS-box protein SOC1 | 14 | 95 | - | - | |
Arst2g03040 | 227 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Arst2g03040 | 227 | MobiDBLite | consensus disorder prediction | 182 | 227 | - | - | |
Arst2g03040 | 227 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst2g03040 | Arst-Chr2 | 88139126 | 88147310 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst2g03040 | 1 | 158 | MADS-box Gene Family | AT2G45660 | 75.949 | 2.87e-84 | 246 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Arst2g03040 | K-box | 7.1e-27 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst2g03040 | - | - | adu:107475751 | 420.624 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Arst2g03040 | 2 | 88139126 | 88147310 | Arst2g03040 | 2 | 88139126 | 88147310 | ECH | |
Arst2g03040 | 2 | 88139126 | 88147310 | Arst2g03039 | 2 | 88114879 | 88136422 | ECH |