Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst2g02180 | ATGGCTTCTTCAAGCATGGAAGGATCAATGCCCACCATGGACGAATATGAGGCTCTCTTGTCAACCACCGACGTCGAACTTCTCAAGAGAGCATGGCGTAGCGAGAAGGCTGCTCCCGAGATTCTCCGCTACGATTTCGATCTCGTTGGCCGCGTCACCGAACAGCTTCAATTGATGGAAGAAACTGTGGATGAGAAATCTACCAGTGGTGCTGACCCGCTTTCGTTGTCTTTATATCAGATGGACTTGGATAGGACCCTCTTTCTCTTGAGATCATATCTTCGGATCCGCATACAGAAGATTGAAAAATACATGTTCCACATTCGAAAAAGTGACGAGCTATGGAATAGGTTATCTAAAGGGGAGAAAGATTTCGCTTCAAGGTGCATAGATGACCTAAAACATCATCTTGAGGAGAGTGTGCTTTCAAAATTGCCTGAAAATTATCAATCCGTTGAGAAGCAATCTGTAATAAGTGAAGAGGATGACATGGTCCCAGAACCACGCCTAGACACATTCGTCTTATGCAGAAGCAAAGAGTATCTCTCTGGCATTCAACTTGAAGATGGACCTGTTGAAGACAGGTCGAAGCTCTTTGAGATGGAGCCGGGTGTCCTTTACTTCATATGTTACAAATCAATAAAGCCACTTGTGGAGAGTGGGAAAATTGATCTTCTCTGA | 681 | 0.4449 | MASSSMEGSMPTMDEYEALLSTTDVELLKRAWRSEKAAPEILRYDFDLVGRVTEQLQLMEETVDEKSTSGADPLSLSLYQMDLDRTLFLLRSYLRIRIQKIEKYMFHIRKSDELWNRLSKGEKDFASRCIDDLKHHLEESVLSKLPENYQSVEKQSVISEEDDMVPEPRLDTFVLCRSKEYLSGIQLEDGPVEDRSKLFEMEPGVLYFICYKSIKPLVESGKIDLL | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst2g02180 | 226 | PIRSF | GINS_Sld5 | 2 | 226 | IPR008591 | GO:0006261 | |
| Arst2g02180 | 226 | FunFam | DNA replication complex GINS protein SLD5 | 10 | 216 | - | - | |
| Arst2g02180 | 226 | SUPERFAMILY | PriA/YqbF domain | 170 | 226 | - | - | |
| Arst2g02180 | 226 | SUPERFAMILY | GINS helical bundle-like | 21 | 156 | IPR036224 | - | |
| Arst2g02180 | 226 | CDD | GINS_B_Sld5 | 168 | 226 | IPR031633 | - | |
| Arst2g02180 | 226 | PANTHER | SLD5 PROTEIN | 11 | 226 | IPR008591 | GO:0006261 | |
| Arst2g02180 | 226 | Gene3D | - | 12 | 216 | - | - | |
| Arst2g02180 | 226 | Pfam | GINS complex protein | 58 | 122 | IPR021151 | - | |
| Arst2g02180 | 226 | Pfam | DNA replication complex GINS protein SLD5 C-terminus | 168 | 226 | IPR031633 | - | |
| Arst2g02180 | 226 | CDD | GINS_A_Sld5 | 24 | 142 | IPR038749 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst2g02180 | 1 | 173 | Core DNA Replication Machinery Family | AT5G49010 | 61.272 | 3.73e-66 | 201 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst2g02180 | K10735 | - | qsa:O6P43_008399 | 356.681 |