Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst2g02090 | ATGGAAGGTCGCCGGAGGATAACACTTTATGATCAAATAACCGCTGGCAAAACCACCTCCCTAGCAGATTTGATCCTTCACGACAGTGTCACCGCCGTCTCTGCCGCCGCCGCAGACACCACCGCCGCCACTGCCGATTCTGAAAGCTGCGAGTTGAGCCAAAGCCGAACCCTCGTAGATATCCTCCGCGAAGATAAACACAACAACATCACCACAGCGGACCGCAAATCTAGAAAATCCTTCAGTTTCATGGACAAGCTTAGATTCAAGCTCGCACTCAATTCAAGATCAAATTACAGTAATGAAAACAATTCCAGTAACAACGACAACAACAACAACAGCAGCAGCAGCAACAATCATATTGATACCAACCTGTCCGAGTTGCAAGCGCGCATCGATCCGGACGAGTTGACTCAGCAAGACGCCACGACTCACCGACAGCAAAACGTCGCCATTGCTACTGCCGCCGCCGCAGACACTGAAATCCCGGCGGAAGTCGCGGTGGTGGGACCGGTTGGCGTGTCGCTAATGGATTTGTTGGAGGAAACGGACATGGAAACGGGATTCGAAGTTTCGAGTTACAGAATGAGCAATGCTGATTTTGAAGATGTGATTGAATGTGTAGAAGAAAAGTGCGAAGAAGAAGGGGCGAGTATCGTGGAACGTAACTGCTGCGTGTGCATGGTGAGGCATAGAGGTGCGGCTTTTATACCCTGCGGGCACACGTTCTGCAGGCTGTGCTCCAGGGAGGTTTGGGTCAACAGAGGGAACTGCCCTCTCTGCAATAATTTCATTTTGGAAATTCTTGATATTTTCTGA | 819 | 0.5018 | MEGRRRITLYDQITAGKTTSLADLILHDSVTAVSAAAADTTAATADSESCELSQSRTLVDILREDKHNNITTADRKSRKSFSFMDKLRFKLALNSRSNYSNENNSSNNDNNNNSSSSNNHIDTNLSELQARIDPDELTQQDATTHRQQNVAIATAAAADTEIPAEVAVVGPVGVSLMDLLEETDMETGFEVSSYRMSNADFEDVIECVEEKCEEEGASIVERNCCVCMVRHRGAAFIPCGHTFCRLCSREVWVNRGNCPLCNNFILEILDIF | 272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst2g02090 | 272 | PANTHER | OS01G0917900 PROTEIN | 4 | 272 | - | - | |
| Arst2g02090 | 272 | CDD | RING-HC | 224 | 261 | - | - | |
| Arst2g02090 | 272 | MobiDBLite | consensus disorder prediction | 97 | 121 | - | - | |
| Arst2g02090 | 272 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 271 | IPR013083 | - | |
| Arst2g02090 | 272 | Pfam | Zinc finger, C3HC4 type (RING finger) | 221 | 265 | - | - | |
| Arst2g02090 | 272 | ProSiteProfiles | Zinc finger RING-type profile. | 224 | 262 | IPR001841 | - | |
| Arst2g02090 | 272 | SMART | ring_2 | 224 | 261 | IPR001841 | - | |
| Arst2g02090 | 272 | SUPERFAMILY | RING/U-box | 223 | 268 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst2g02090 | Arst-Chr2 | 68089210 | 68090791 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst2g02090 | 1 | 272 | C3H Transcription Factor Family | AT3G25030 | 36.934 | 1.83e-37 | 131 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst2g02090 | - | - | gmx:100802736 | 188.348 |