LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst2g02070	ATGGGATTCTCTATAGCTATTCAAGAACAAACACCACAAGAGGATCAAGAAGCAAAGCCTTTCATGGCTTCAAATAGTGGTAGTTTTAAGAGCATCAACTCAAGTACTACACCTACTCAACTTGAACCACTCCATCTTCATCATAATCATCATCATCATCATCATAATCAAATACAAGAGCAACAACAACACCAAATTTCCTTCGGAATGATGCCATCTTCTTCTTCTTCATCTATCCCAGGAAACTATCTAAACAGAGATTCCGGAGCTTATGATTTGGGTGAACTGGATCAAGCCTTTTTCATGTATCTTGATGGCCAACCTGACCCCTCCACTCTTCAAGACCAAAGACCAGAGAACTCATCATCTTCAGGAATGAGGCCACCAACTCTCAACATTTTCCCCTCTCAGCCTATGCACGTAGACCCCCCGCCATCCAATTCCAAGGCTACAACGGAATTGGTTTCTGCCCAAACCAATGGTTCCAAGAGACCATCAGAGCCGTCCATGGAATCAACCAACCCGCGAAATAATGCCGCTTCTGCTCCTGAACCACCCAAACCTATAAAGCGAGAGAACAACCGCAAGGGCACAACTTCAAGTTCTGAACAAGAGGGACCAAAAACACCAGATCCTAAGACACTAAGAAGACTTGCCCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTGAGGAAAAAGGCGTATGTTCAGCAGCTAGAAACAAGTAGGATTAAGCTGAATCAGTTGGAACAAGAGTTACAGAGAGCCAGAGCTCAAGGCATTTTCATGGGTGGAAATGCACTTTTGGGAGGAGAACAAGGCCTTCCTCTTCCTATGACTACTATTACCTCAGAGGCAGCAATGTTTGACATGGAATATGGAAGGTGGTTAGAGGAGCACCACCGTCTAGTGTGCGAACTAAGAGCAGCGGTGCAGGAACACCTGCAGGAGAACGAGCTAAGAATGTACGTTGAAAATTGCTTGGGTCATTATGACCAAGTGATGAATCTGAAGAGCATTGTGGCCAAAACAGACGCATTTCATATTGTTTTTGGAATGTGGAAAACACCAGCTGAACGCTGTTTCATGTGGATCGGTGGCTTCAGGCCTTCTGAACTCATTAAGGTTATTATGGGTCAAATTGAGCCTCTTACGGAGCAACAAATATTAGGGATATGTGGGTTGCAACAAACAACACGTGAGGCAGAAGAAGCTCTATCCCAAGGGCTTGAAGCTCTCAATCAATCACTAACAGAAACCATAACATCAGATTCATTGAGTTCTCCACCAAACATGGTTAATTACATGGGACAAATGGCTGTGGCCATGAGCAAGCTTTCAACTATCGAAGGTTTCCTTAGGCAGATAATCTGA	1374	0.4432	MGFSIAIQEQTPQEDQEAKPFMASNSGSFKSINSSTTPTQLEPLHLHHNHHHHHHNQIQEQQQHQISFGMMPSSSSSSIPGNYLNRDSGAYDLGELDQAFFMYLDGQPDPSTLQDQRPENSSSSGMRPPTLNIFPSQPMHVDPPPSNSKATTELVSAQTNGSKRPSEPSMESTNPRNNAASAPEPPKPIKRENNRKGTTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARAQGIFMGGNALLGGEQGLPLPMTTITSEAAMFDMEYGRWLEEHHRLVCELRAAVQEHLQENELRMYVENCLGHYDQVMNLKSIVAKTDAFHIVFGMWKTPAERCFMWIGGFRPSELIKVIMGQIEPLTEQQILGICGLQQTTREAEEALSQGLEALNQSLTETITSDSLSSPPNMVNYMGQMAVAMSKLSTIEGFLRQII	457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst2g02070	457	MobiDBLite	consensus disorder prediction	60	83	-	-
	Arst2g02070	457	SUPERFAMILY	Leucine zipper domain	213	255	IPR046347	GO:0003700\|GO:0006355
	Arst2g02070	457	CDD	bZIP_HBP1b-like	213	265	-	-
	Arst2g02070	457	PANTHER	TRANSCRIPTION FACTOR TGA9	123	455	-	-
	Arst2g02070	457	MobiDBLite	consensus disorder prediction	1	83	-	-
	Arst2g02070	457	MobiDBLite	consensus disorder prediction	143	180	-	-
	Arst2g02070	457	Pfam	Seed dormancy control	304	378	IPR025422	GO:0006351\|GO:0043565
	Arst2g02070	457	Gene3D	-	212	261	-	-
	Arst2g02070	457	MobiDBLite	consensus disorder prediction	1	43	-	-
	Arst2g02070	457	FunFam	BZIP family transcription factor	212	261	-	-
	Arst2g02070	457	MobiDBLite	consensus disorder prediction	104	216	-	-
	Arst2g02070	457	Pfam	bZIP transcription factor	213	251	IPR004827	GO:0003700\|GO:0006355
	Arst2g02070	457	Coils	Coil	232	259	-	-
	Arst2g02070	457	ProSiteProfiles	DOG1 domain profile.	286	457	IPR025422	GO:0006351\|GO:0043565
	Arst2g02070	457	SMART	brlzneu	209	275	IPR004827	GO:0003700\|GO:0006355
	Arst2g02070	457	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	216	231	IPR004827	GO:0003700\|GO:0006355
	Arst2g02070	457	MobiDBLite	consensus disorder prediction	109	131	-	-
	Arst2g02070	457	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	211	255	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst2g02070	Arst-Chr2	67357175	67367904	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst2g02070	81	455	Basic region leucine zipper (bZIP) Transcription Factor Gene Family	AT5G06839	61.111	1.05e-160	460

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Arst2g02070		DOG1	5.3e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst2g02070	K14431		-	gmx:100799713	656.366