LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst2g02068	ATGGGATTCTCTATAGCTATTCAAGAACAAACACCACAAGAGGATCAAGAAGCAAAGCCTTTCATGGCTTCAAATAGTGGTAGTTTTAAGAGCATCAACTCAAGTACTACACCTACTCAACTTGAACCACTCCATCTTCATCATAATCATCATCATCATCATCATAATCAAATACAAGAGCAACAACAACACCAAATTTCCTTCGGAATGATGCCATCTTCTTCTTCTTCATCTATCCCAGGAAACTATCTAAACAGAGATTCCGGAGCTTATGATTTGGGTGAACTGGATCAAGCCTTTTTCATGTATCTTGATGGCCAACCTGACCCCTCCACTCTTCAAGACCAAAGACAGAACTCATCATCTTCAGGAATGAGGCCACCAACTCTCAACATTTTCCCCTCTCAGCCTATGCACGTAGACCCCCCGCCATCCAATTCCAAGGCTACAACGGAATTGGTTTCTGCCCAAACCAATGGTTCCAAGAGACCATCAGAGCCGTCCATGGAATCAACCAACCCGCGAAATAATGCCGCTTCTGCTCCTGAACCACCCAAACCTATAAAGCGAGAGAACAACCGCAAGGGCACAACTTCAAGTTCTGAACAAGAGGGACCAAAAACACCAGATCCTAAGACACTAAGAAGACTTGCCCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTGAGGAAAAAGGCGTATGTTCAGCAGCTAGAAACAAGTAGGATTAAGCTGAATCAGTTGGAACAAGAGTTACAGAGAGCCAGAGCTCAAGGCATTTTCATGGGTGGAAATGCACTTTTGGGAGGAGAACAAGGCCTTCCTCTTCCTATGACTACTATTACCTCAGAGGCAGCAATGTTTGACATGGAATATGGAAGGTGGTTAGAGGAGCACCACCGTCTAGTGTGCGAACTAAGAGCAGCGGTGCAGGAACACCTGCAGGAGAACGAGCTAAGAATGTACGTTGAAAATTGCTTGGGTCATTATGACCAAGTGATGAATCTGAAGAGCATTGTGGCCAAAACAGACGCATTTCATATTGTTTTTGGAATGTGGAAAACACCAGCTGAACGCTGTTTCATGTGGATCGGTGGCTTCAGGCCTTCTGAACTCATTAAGGTTATTATGGGTCAAATTGAGCCTCTTACGGAGCAACAAATATTAGGGATATGTGGGTTGCAACAAACAACACGTGAGGCAGAAGAAGCTCTATCCCAAGGGCTTGAAGCTCTCAATCAATCACTAACAGAAACCATAACATCAGATTCATTGAGTTCTCCACCAAACATGGTTAATTACATGGGACAAATGGCTGTGGCCATGAGCAAGCTTTCAACTATCGAAGGTTTCCTTAGGCAGGCAGATAATCTGAGGCAGCAAACACTGCACCGTCTGCATCAGATTCTAACAACACGGCAATCCGCAAGGTGTTTGCTGGCAATAGCGGAGTACTTCCATCGCCTTAGAGCTCTCAGTTCTCTTTGGATGTCACGCCCTCGCCAAGAATAA	1512	0.4497	MGFSIAIQEQTPQEDQEAKPFMASNSGSFKSINSSTTPTQLEPLHLHHNHHHHHHNQIQEQQQHQISFGMMPSSSSSSIPGNYLNRDSGAYDLGELDQAFFMYLDGQPDPSTLQDQRQNSSSSGMRPPTLNIFPSQPMHVDPPPSNSKATTELVSAQTNGSKRPSEPSMESTNPRNNAASAPEPPKPIKRENNRKGTTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARAQGIFMGGNALLGGEQGLPLPMTTITSEAAMFDMEYGRWLEEHHRLVCELRAAVQEHLQENELRMYVENCLGHYDQVMNLKSIVAKTDAFHIVFGMWKTPAERCFMWIGGFRPSELIKVIMGQIEPLTEQQILGICGLQQTTREAEEALSQGLEALNQSLTETITSDSLSSPPNMVNYMGQMAVAMSKLSTIEGFLRQADNLRQQTLHRLHQILTTRQSARCLLAIAEYFHRLRALSSLWMSRPRQE	503

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst2g02068	503	Pfam	bZIP transcription factor	212	250	IPR004827	GO:0003700\|GO:0006355
	Arst2g02068	503	Pfam	Seed dormancy control	303	377	IPR025422	GO:0006351\|GO:0043565
	Arst2g02068	503	MobiDBLite	consensus disorder prediction	109	130	-	-
	Arst2g02068	503	MobiDBLite	consensus disorder prediction	60	83	-	-
	Arst2g02068	503	FunFam	BZIP family transcription factor	211	260	-	-
	Arst2g02068	503	CDD	bZIP_HBP1b-like	212	264	-	-
	Arst2g02068	503	PANTHER	TRANSCRIPTION FACTOR TGA9	120	502	-	-
	Arst2g02068	503	SUPERFAMILY	Leucine zipper domain	212	254	IPR046347	GO:0003700\|GO:0006355
	Arst2g02068	503	SMART	brlzneu	208	274	IPR004827	GO:0003700\|GO:0006355
	Arst2g02068	503	MobiDBLite	consensus disorder prediction	104	215	-	-
	Arst2g02068	503	MobiDBLite	consensus disorder prediction	1	83	-	-
	Arst2g02068	503	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	210	254	IPR004827	GO:0003700\|GO:0006355
	Arst2g02068	503	Coils	Coil	231	258	-	-
	Arst2g02068	503	MobiDBLite	consensus disorder prediction	1	43	-	-
	Arst2g02068	503	MobiDBLite	consensus disorder prediction	142	179	-	-
	Arst2g02068	503	ProSiteProfiles	DOG1 domain profile.	285	499	IPR025422	GO:0006351\|GO:0043565
	Arst2g02068	503	Gene3D	-	211	260	-	-
	Arst2g02068	503	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	215	230	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst2g02068	Arst-Chr2	67356948	67367904	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst2g02068	81	503	Basic region leucine zipper (bZIP) Transcription Factor Gene Family	AT5G06839	63.288	0.0	548

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Arst2g02068		DOG1	6.1e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst2g02068	K14431		-	gmx:100815176	749.199