Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g01868 ATGGACTTGGGAAACGAAACCAACATCTCTCAACCCTACACCCAAGAAGACGGCGACCCCAAGCACCTCGGCTTCATCTACGCCAACATCATCGGCCTCCGCTACTGCTCTGGCCCCGTCCGCGCCCGCCAGATGGTCGCCTTCCTCCGCGAACCTCTCCATCCCCACAGCCCCAACGCCATCAAAGTCCTCAACACCCGCTCCGTCCAGGTCGGTTACATCGATTGGACCGTCGCCGACGCACTTTCCCCTCTCATCGACTCCGAACTCATCACCGTCAAGGCCTTCGTCCCCAACCGCCGCTCCAAGACTGACCGCTCCCTCAGCTTTTTCGCTCTTTGCCGTAAAAAAAAAAAACCCGCTGATTCGAGGTTCAAGAGTGTGGACGAGAGATTGACGGCGAAAGAGCGTGTCTCTCGCGAGCTGGAGCCTCCGGAGAGCGTTGTGAGGTTCCTCGGCTTCATCAACGCCAACATCATCGGCCTCGGCCATTGCTCCGGCGCTGTCCACGCCCGCGAGATGGTCGCCTTCCTCCGCGAACCTCTCCATCCCCACAGCCCCAACGCCATCAAAGTCCTCAACACCCGCTCCGTCCAGGTCGGTTACATCGAGTGGACCGTCGCCGACGCACTTTCCCCTCTCATCGACTGCGAACTCATCACCGTCGAGGCCATCGTCCCCAACCGCCGCTCCAAGACTGACCGCTCCCTCCTCTGCCAAATCCACATCTTCGCCCCTCTCCCTTCTTTCCCCACTGTCACTCAGCTCATCTCCGAACGCGGCCTCCACCTCATAACCCGAAACGACGCCTCCTTTAAGATATCGGTCGTTACTGTCAAAGAAACCCCCGCTGATTCGAGGTTCAAGAGTGTGGACGAGATTTTCAGGCGATTTGGCGAGAGATTGACGGCGAAAGAGCGTGTCTCTCACGCGCTGGAGCCTCCGGAGAGCGTTGTGAGGTCGAAGCTCATGGAGCACCAGAAGGAAGGGTTGTGGTGGCTACTCAACAGAGAGGAAAGCAAGGAGCTTCCGCCGTTTTGGGAGGAAAGAGAAGGGGGCGAGTTCGTCAACGTATTGACCAATTCCAGCACGTGCTTAAAGCCAGAGCCTTTGAGGGGAGGGATCCTGGCCGATGAAATGGGGCTCGGAAAGACTCTCACTTTGCTCTCTCTTATTGCCCTTGATAAGGATTCCGGTGAGAGGAAGGGAAAGAAGAGAAGAAAGATTGAAATTGGGGAGAGCAGTGCAACGCTTGTAGTGTGCCCTCCCCCTGTGTTTTCGACTTGGATTTTGCAATTGGAGGAACACATTGTGCCTGGTTCACTGAGGACTTACATGTATCATGGTGACAAGAGGGCTAAGAATGCTGAGGACCTCATGGATTATGATTTGGTGCTCACTACTTACTCTACACTCGCCGTGGAGGCGGATGACCCCCACTCGCCGGTGAAGAAGGTGGTCTGGAGGAGGATCATATTGGATGAGGCTCACGGTATCAAGAATTCATATGCCCAGCAGAGCAAGATGGTTATTAGTCTCAATGCCAAGAGGAGGTGGGCTGTCACCGGCACACCTATTCATAATGGCTCCGTGGACTTGTTTTCACTCGTGGCTTTCCTGCATTTTGAGCCCTTCTCCGAATATGGCTATTGGCGCAGCCTCGTGCGACGGCCTCTCAGTCAGGGCCTTCCGAGCGGCCTCTCACGCCTGCAGGTTTTGATGGCGGCAATTTCGTTAAGAAGAACAAAAGACAAAGGATTGTTAGGCCTGCCACCAAAAACTATTGAGACTCAATATGTTGAACTTAATTCAGAAGAACGTGAACTGTATGATCAGGTGAAAGAGCATGTGACGCGTTCCATGAATTTTACTTTTTTCATTGGAGTTAAGAGTTCTGCTTATGCGCTAAGTATGCTTTTTCATCTTTGCCAAATATGTACTGATTTAGCATTGGTCCCTAATGATCTCGCAACCACATTCTGTTCAACTAATATTGAAGAAGCTTCCAATAACCCGCAGTTGTTGCAAAAGTTAGTTGAGATGCTGCAAGACGGCGTAGATTATGAGTGCCCAATTTGCACTTCTCCTTCAGCAGACATCATTATCACCCGCTGTGCTCACATCTTCTGCCGAGTCTGTATTCTGACATGTCTACGATCCAGAAATTCCTGTTGTCCTCTTTGCCGTCAAGCCCTATCTGGATCTGACTTGTTCTCAGCCCCACTCGAGCCTTCTAAAGCTGAAAGTACCGCTTCATCCTCATCATGGGATAAAAAGTTATCTTCCAAAACATCTGCTTTGATAAAATTTCTTAAAGAATCAAGAGAACAGAAGCCAGCAGCAAAGTCAGTAGTGTTTTCACAATTTCGCAAGTTGTTGGTGTTATTGGAAGCACCTTTGAAGGAGGCTGGTTTCAAGGCTTTGCGCATTGATGGCTCAATGACTCCTAAACAGAGGGCTAACGTTATTGATCAATTTCAAGGCACTAAAGAAAATGCACCAACCATTCTGCTTGCAGGCCCTGTGCCTTCAGGTGCAGAAATAAATCTCACTGCTGCCACCATGGTGTATTTCATGGAGCCATGGTGGAATCCAGCTGTCGAGGAACAGGCCATGAATTGCATCCATCGTATTGGACAGAAAGAGGCTGTGAAGATTGTTAGATTGGTTGCTCGGGACAGCATTGAGGAAAAGATACTGATGTTGCAGGAGAAGAAGAGAGAACTAGCAAGAAGTGATTTTGGTCAAATCAACGATAAAGATCTATGTTTCCTTATGTCCGAGTAA 2787 0.5074 MDLGNETNISQPYTQEDGDPKHLGFIYANIIGLRYCSGPVRARQMVAFLREPLHPHSPNAIKVLNTRSVQVGYIDWTVADALSPLIDSELITVKAFVPNRRSKTDRSLSFFALCRKKKKPADSRFKSVDERLTAKERVSRELEPPESVVRFLGFINANIIGLGHCSGAVHAREMVAFLREPLHPHSPNAIKVLNTRSVQVGYIEWTVADALSPLIDCELITVEAIVPNRRSKTDRSLLCQIHIFAPLPSFPTVTQLISERGLHLITRNDASFKISVVTVKETPADSRFKSVDEIFRRFGERLTAKERVSHALEPPESVVRSKLMEHQKEGLWWLLNREESKELPPFWEEREGGEFVNVLTNSSTCLKPEPLRGGILADEMGLGKTLTLLSLIALDKDSGERKGKKRRKIEIGESSATLVVCPPPVFSTWILQLEEHIVPGSLRTYMYHGDKRAKNAEDLMDYDLVLTTYSTLAVEADDPHSPVKKVVWRRIILDEAHGIKNSYAQQSKMVISLNAKRRWAVTGTPIHNGSVDLFSLVAFLHFEPFSEYGYWRSLVRRPLSQGLPSGLSRLQVLMAAISLRRTKDKGLLGLPPKTIETQYVELNSEERELYDQVKEHVTRSMNFTFFIGVKSSAYALSMLFHLCQICTDLALVPNDLATTFCSTNIEEASNNPQLLQKLVEMLQDGVDYECPICTSPSADIIITRCAHIFCRVCILTCLRSRNSCCPLCRQALSGSDLFSAPLEPSKAESTASSSSWDKKLSSKTSALIKFLKESREQKPAAKSVVFSQFRKLLVLLEAPLKEAGFKALRIDGSMTPKQRANVIDQFQGTKENAPTILLAGPVPSGAEINLTAATMVYFMEPWWNPAVEEQAMNCIHRIGQKEAVKIVRLVARDSIEEKILMLQEKKRELARSDFGQINDKDLCFLMSE 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g01868 928 ProSitePatterns Zinc finger RING-type signature. 705 714 IPR017907 -
Arst2g01868 928 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 365 543 IPR014001 -
Arst2g01868 928 CDD SF2_C_SNF 757 890 - -
Arst2g01868 928 Gene3D - 359 582 IPR038718 -
Arst2g01868 928 Pfam Zinc finger, C3HC4 type (RING finger) 687 732 - -
Arst2g01868 928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 740 IPR013083 -
Arst2g01868 928 Gene3D - 146 264 - -
Arst2g01868 928 Gene3D - 14 132 - -
Arst2g01868 928 ProSiteProfiles Zinc finger RING-type profile. 690 729 IPR001841 -
Arst2g01868 928 SMART ring_2 690 728 IPR001841 -
Arst2g01868 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 581 IPR027417 -
Arst2g01868 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 916 IPR027417 -
Arst2g01868 928 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 283 926 - -
Arst2g01868 928 SMART ultradead3 319 551 IPR014001 -
Arst2g01868 928 SMART helicmild6 794 879 IPR001650 -
Arst2g01868 928 Pfam SNF2-related domain 326 649 IPR000330 GO:0005524|GO:0140658
Arst2g01868 928 Coils Coil 892 912 - -
Arst2g01868 928 Pfam HIRAN domain 24 103 IPR014905 GO:0003676|GO:0008270|GO:0016818
Arst2g01868 928 Pfam HIRAN domain 153 243 IPR014905 GO:0003676|GO:0008270|GO:0016818
Arst2g01868 928 SMART HIRAN_2 23 120 IPR014905 GO:0003676|GO:0008270|GO:0016818
Arst2g01868 928 SMART HIRAN_2 152 245 IPR014905 GO:0003676|GO:0008270|GO:0016818
Arst2g01868 928 SUPERFAMILY RING/U-box 687 738 - -
Arst2g01868 928 Pfam Helicase conserved C-terminal domain 763 879 IPR001650 -
Arst2g01868 928 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 766 925 IPR001650 -
Arst2g01868 928 Gene3D - 591 923 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g01868 Arst-Chr2 56725798 56729857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g01868 151 927 RAD5 or RAD16-like Gene Family AT5G05130 52.000 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst2g01868 SNF2_N 2.4e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g01868 K15711 - fve:101311093 829.32