Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst2g01593 | ATGGCAAAACCTATACCCAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCACGTAAACATGCTCGTAAAATACCAAAGGGCGTTATTCATGTTCAAGCTAATTTCAACAATACCATGGTCATTGTTACCGATGTACGGGGTCAGGTAATTTCGTGGTCCTCCGCAGGTACTTGTGGATTCAAAGGTACACGAAGGGGAACACCATTTGCCGCCCAAACCGCAGCAGGAAATATTATTCGAACAATAGCGAATCAAGGCATGCAACGAGCTGAAGTCATGATAAAGGGTCCCGGTCTCGGAAAAGATACGGTATTAAGAACTATTCGTAGAAGTGGCATACTCTTAAATTTTATACGGGATGTAACCCCTATGCCACATAATGGGTGTAGGTCCCCTAAAAAATGA | 408 | 0.4289 | MAKPIPKIGSRKNGRIGSRKHARKIPKGVIHVQANFNNTMVIVTDVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAGNIIRTIANQGMQRAEVMIKGPGLGKDTVLRTIRRSGILLNFIRDVTPMPHNGCRSPKK | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst2g01593 | 135 | FunFam | 30S ribosomal protein S11, chloroplastic | 11 | 135 | - | - | |
| Arst2g01593 | 135 | Gene3D | Ribosomal protein S11 | 13 | 135 | IPR036967 | GO:0003735|GO:0005840|GO:0006412 | |
| Arst2g01593 | 135 | PANTHER | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 | 24 | 135 | IPR001971 | GO:0003735|GO:0005840|GO:0006412 | |
| Arst2g01593 | 135 | Pfam | Ribosomal protein S11 | 28 | 135 | IPR001971 | GO:0003735|GO:0005840|GO:0006412 | |
| Arst2g01593 | 135 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Arst2g01593 | 135 | PIRSF | RPS11p_RPS11a_RPS14e_RPS11o | 7 | 135 | IPR001971 | GO:0003735|GO:0005840|GO:0006412 | |
| Arst2g01593 | 135 | Hamap | 30S ribosomal protein S11 [rpsK]. | 11 | 135 | IPR001971 | GO:0003735|GO:0005840|GO:0006412 | |
| Arst2g01593 | 135 | SUPERFAMILY | Translational machinery components | 23 | 135 | - | - | |
| Arst2g01593 | 135 | ProSitePatterns | Ribosomal protein S11 signature. | 106 | 128 | IPR018102 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst2g01593 | Arst-Chr2 | 34196622 | 34197034 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst2g01593 | 28 | 128 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52580 | 33.636 | 2.46e-12 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst2g01593 | K02948 | - | gmx:3989330 | 244.973 |