Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g01518 ATGGGTAACTCTCACTCACATCGCAAACACCGTAACTCCCTCTCTCAAAACAATAACTCTTCTTCTTCTATTGCTACTCCTCCACACTATAGATATGGTGCTCATCATTATCCAAAACAACAACACTGTAATAGGACGATGGTGAGCAGCAAGATTTCTTTGCCTTACGGGCGCGTGGACACCACGCTCCGAGAACTCGCTGCCAAGGCCGAAGGCTTCGGACGCTTCGCCATCGGCGGCCTCCATGGTCCGCTATACCATGTCACTAATCTCGCAGATGATGGACCAGGATCACTACGCGATGCATGTCGTAGAAAAGAACCATTATGGATTGTATTTGAGGTTTCAGGCACAATTCATCTGTCATCGTATTTGAATGTATCATCTTACAAGACCATTGACGGCCGGGGCCAAAGGATTAAACTCACCGGTAAAGGGTTGCGGCTGAAGGAATGCGAGCATGTAATAGTGTGCAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATGTTGATGCCATTCAAATCAAGCCTAACTCAAAGCACATATGGATAGATCGTTGTACTCTCAGTGATTTCGAAGATGGGCTGATAGACATCACCAGAGAAAGCACAGATATTACAATTTCAAGGTGTCATTTTTCTAAGCATGACAAAACAATTCTCATTGGAGCAGATCCCTCACATGTTGGTGATAGATGCATAAGGGTCACCATTCATCATTGCTTCTTCGATGGGACTCGACAGAGGCATCCTCGCGTTCGATTTGCAAAAGTTCATCTGTATAACAATTATACCAGAAACTGGGGCATATATGCTGCTTGTGCGAGTGTGGAGTCCCAGATATTCTCGCAACATAATATTTATGAAGCAGGGCAGAAGAAGGTAGCATTCAAGTACCTTTCTGAGAAGGCAGCAGACAAGGGAGCAGAAGCAAGTGGCCGCATAATATCCGAAGGAGATTTGTTTATAAATGGAACACAATCAGGGCTAATAGCATCTAACAATCTTGAATGCAACAATTTTCATCCTAGGGAACACTATCCGGCATGGACGGTGGAACCTCCTTCACATGATCTAAAACAGGTTCTTCAGCATTGCACTGGATGGCAATCTATGGCGAGGCCATTAGACCAAACGGTTGAACACGGTGCACATGATGAAGCAGTACCTATTTATCCATTCCAAACTCACAGCATTGTAGCCAGTTTGCCTTATGCACGAGTGGACTCCTCCCTCCGAGCACTTGCTGGCTCGGCCGAGGGATTTGGACACTCTGCCATTGGTGGCCTCCGTGGTCCCCTTTATCATGTAACAACTCTAGCAGATGATGGACCGGGGTCGCTGCGTGACGCATGTCGCAGAAAAGATCCTTTGTGGATTGTATTTCAAGTTTCAGGCACAATTCATCTGTCTACATTTTTGAGTGTATCATCTTATAAGACCATCGATGGCCGGGGCCGAAGGATTAAACTCACCGGAAAAGGATTGCGGCTGAAGGAATGTGAGCATGTAATAATTTGTAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATAGTGATGCCATTCAGATCAAGCCTAATTCGAAGCACATATGGATAGATCGTTGCAGCCTCAGTGATTTCGATGATGGACTCATAGACATCACTAGAGAAAGCACGGATATTACCATTTCAAGGTGTCATTTTTCTAAGCACAACAAAACAATTCTCATCGGAGCAGATCCCTCGCATGTTGGGGATAGGTGCATAAGGGTCACCATTCACCACTGCTTTTTCGATGAGACTCGACAGAGGCATCCTCGTGTTAGATTTGCAAACATACATCTTTACAATAATTATAGCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTGGAATCACAGATATTCTCACAACATAATATCTATGAAGCAGGGCAGAAGAAGGTGGCATTTAAGTATCTTTCTGAAAAGGCAGCAGACAAGGGAGAAGAAGCAAGTGGCCGCATAATTTCTGAAGGAGACATGTTTATAAATGGAGCACAATCAGGGCTAATGACAGAGAACAATGATGGAAGTAACATTTTTCATCCAAGTGAATATTATCCCACTTGGACAATGGAACCTTCTTCAGATAATCTAAAACAGGTTCTTCAGTACTTCACTGGATGGCAATCTATTGCCAGGCCAGAAGATTAA 2181 0.4434 MGNSHSHRKHRNSLSQNNNSSSSIATPPHYRYGAHHYPKQQHCNRTMVSSKISLPYGRVDTTLRELAAKAEGFGRFAIGGLHGPLYHVTNLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRESTDITISRCHFSKHDKTILIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAACASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGAEASGRIISEGDLFINGTQSGLIASNNLECNNFHPREHYPAWTVEPPSHDLKQVLQHCTGWQSMARPLDQTVEHGAHDEAVPIYPFQTHSIVASLPYARVDSSLRALAGSAEGFGHSAIGGLRGPLYHVTTLADDGPGSLRDACRRKDPLWIVFQVSGTIHLSTFLSVSSYKTIDGRGRRIKLTGKGLRLKECEHVIICNLEFEGGRGPDSDAIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSKHNKTILIGADPSHVGDRCIRVTIHHCFFDETRQRHPRVRFANIHLYNNYSRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGEEASGRIISEGDMFINGAQSGLMTENNDGSNIFHPSEYYPTWTMEPSSDNLKQVLQYFTGWQSIARPED 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g01518 726 MobiDBLite consensus disorder prediction 13 27 - -
Arst2g01518 726 PANTHER PECTATE LYASE 18-RELATED 408 682 IPR045032 GO:0030570
Arst2g01518 726 SMART pbh1 152 177 IPR006626 -
Arst2g01518 726 SMART pbh1 528 549 IPR006626 -
Arst2g01518 726 SMART pbh1 203 224 IPR006626 -
Arst2g01518 726 SMART pbh1 604 626 IPR006626 -
Arst2g01518 726 SMART pbh1 552 573 IPR006626 -
Arst2g01518 726 SMART pbh1 501 526 IPR006626 -
Arst2g01518 726 SMART pbh1 179 200 IPR006626 -
Arst2g01518 726 Gene3D - 405 715 IPR012334 -
Arst2g01518 726 Gene3D - 56 354 IPR012334 -
Arst2g01518 726 MobiDBLite consensus disorder prediction 1 38 - -
Arst2g01518 726 SUPERFAMILY Pectin lyase-like 416 720 IPR011050 -
Arst2g01518 726 PRINTS Pollen allergen Amb family signature 620 639 IPR018082 -
Arst2g01518 726 PRINTS Pollen allergen Amb family signature 473 489 IPR018082 -
Arst2g01518 726 PRINTS Pollen allergen Amb family signature 418 435 IPR018082 -
Arst2g01518 726 SMART amb_all 445 643 IPR002022 -
Arst2g01518 726 SMART amb_all 81 294 IPR002022 -
Arst2g01518 726 Pfam Pectate lyase 125 287 IPR002022 -
Arst2g01518 726 Pfam Pectate lyase 474 636 IPR002022 -
Arst2g01518 726 SUPERFAMILY Pectin lyase-like 68 373 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g01518 Arst-Chr2 29192671 29198722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g01518 440 726 Polysaccharide Lyase AT3G55140 73.171 1.25e-157 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g01518 K01728 - ecad:122607709 1048.5