Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g01516 ATGGGTAACTCTCACTCACATCGCAAACACCGTAACTCCCTCTCTCAAAACAATAACTCTTCTTCTTCTATTGCTACTCCTCCACACTATAGATATGGTGCTCATCATTATCCAAAACAACAACACTGTAATAGGACGATGGTGAGCAGCAAGATTTCTTTGCCTTACGGGCGCGTGGACACCACGCTCCGAGAACTCGCTGCCAAGGCCGAAGGCTTCGGACGCTTCGCCATCGGCGGCCTCCATGGTCCGCTATACCATGTCACTAATCTCGCAGGTTTCTTTCATGATGGACCAGGATCACTACGCGATGCATGTCGTAGAAAAGAACCATTATGGATTGTATTTGAGGTTTCAGGCACAATTCATCTGTCATCGTATTTGAATGTATCATCTTACAAGACCATTGACGGCCGGGGCCAAAGGATTAAACTCACCGGTAAAGGGTTGCGGCTGAAGGAATGCGAGCATGTAATAGTGTGCAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATGTTGATGCCATTCAAATCAAGCCTAACTCAAAGCACATATGGATAGATCGTTGTACTCTCAGTGATTTCGAAGATGGGCTGATAGACATCACCAGAGAAAGCACAGATATTACAATTTCAAGGTGTCATTTTTCTAAGCATGACAAAACAATTCTCATTGGAGCAGATCCCTCACATGTTGGTGATAGATGCATAAGGGTCACCATTCATCATTGCTTCTTCGATGGGACTCGACAGAGGCATCCTCGCGTTCGATTTGCAAAAGTTCATCTGTATAACAATTATACCAGAAACTGGGGCATATATGCTGCTTGTGCGAGTGTGGAGTCCCAGGCAGCAGACAAGGGAGCAGAAGCAAGTGGCCGCATAATATCCGAAGGAGATTTGTTTATAAATGGAACACAATCAGGGCTAATAGCATCTAACAATCTTGAATGCAACAATTTTCATCCTAGGGAACACTATCCGGCATGGACGGTGGAACCTCCTTCACATGATCTAAAACAGGTTCTTCAGCATTGCACTGGATGGCAATCTATGGCGAGGCCATTAGACCAAACGGTTGAACACGGTGCACATGATGAAGCAGTACCTATTTATCCATTCCAAACTCACAGCATTGTAGCCAGTTTGCCTTATGCACGAGTGGACTCCTCCCTCCGAGCACTTGCTGGCTCGGCCGAGGGATTTGGACACTCTGCCATTGGTGGCCTCCGTGGTCCCCTTTATCATGTAACAACTCTAGCAGATGATGGACCGGGGTCGCTGCGTGACGCATGTCGCAGAAAAGATCCTTTGTGGATTGTATTTCAAGTTTCAGGCACAATTCATCTGTCTACATTTTTGAGTGTATCATCTTATAAGACCATCGATGGCCGGGGCCGAAGGATTAAACTCACCGGAAAAGGATTGCGGCTGAAGGAATGTGAGCATGTAATAATTTGTAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATAGTGATGCCATTCAGATCAAGCCTAATTCGAAGCACATATGGATAGATCGTTGCAGCCTCAGTGATTTCGATGATGGACTCATAGACATCACTAGAGAAAGCACGGATATTACCATTTCAAGGTGTCATTTTTCTAAGCACAACAAAACAATTCTCATCGGAGCAGATCCCTCGCATGTTGGGGATAGGTGCATAAGGGTCACCATTCACCACTGCTTTTTCGATGAGACTCGACAGAGGCATCCTCGTGTTAGATTTGCAAACATACATCTTTACAATAATTATAGCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTGGAATCACAGATATTCTCACAACATAATATCTATGAAGCAGGGCAGAAGAAGGTGGCATTTAAGTATCTTTCTGAAAAGGCAGCAGACAAGGGAGAAGAAGCAAGTGGCCGCATAATTTCTGAAGGAGACATGTTTATAAATGGAGCACAATCAGGGCTAATGACAGAGAACAATGATGGAAGTAACATTTTTCATCCAAGTGAATATTATCCCACTTGGACAATGGAACCTTCTTCAGATAATCTAAAACAGGTTCTTCAGTACTTCACTGGATGGCAATCTATTGCCAGGCCAGAAGATTAA 2121 0.4451 MGNSHSHRKHRNSLSQNNNSSSSIATPPHYRYGAHHYPKQQHCNRTMVSSKISLPYGRVDTTLRELAAKAEGFGRFAIGGLHGPLYHVTNLAGFFHDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRESTDITISRCHFSKHDKTILIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAACASVESQAADKGAEASGRIISEGDLFINGTQSGLIASNNLECNNFHPREHYPAWTVEPPSHDLKQVLQHCTGWQSMARPLDQTVEHGAHDEAVPIYPFQTHSIVASLPYARVDSSLRALAGSAEGFGHSAIGGLRGPLYHVTTLADDGPGSLRDACRRKDPLWIVFQVSGTIHLSTFLSVSSYKTIDGRGRRIKLTGKGLRLKECEHVIICNLEFEGGRGPDSDAIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSKHNKTILIGADPSHVGDRCIRVTIHHCFFDETRQRHPRVRFANIHLYNNYSRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGEEASGRIISEGDMFINGAQSGLMTENNDGSNIFHPSEYYPTWTMEPSSDNLKQVLQYFTGWQSIARPED 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g01516 706 MobiDBLite consensus disorder prediction 1 37 - -
Arst2g01516 706 Gene3D - 56 333 IPR012334 -
Arst2g01516 706 Gene3D - 385 695 IPR012334 -
Arst2g01516 706 MobiDBLite consensus disorder prediction 13 27 - -
Arst2g01516 706 SUPERFAMILY Pectin lyase-like 68 352 IPR011050 -
Arst2g01516 706 SMART pbh1 508 529 IPR006626 -
Arst2g01516 706 SMART pbh1 584 606 IPR006626 -
Arst2g01516 706 SMART pbh1 481 506 IPR006626 -
Arst2g01516 706 SMART pbh1 206 227 IPR006626 -
Arst2g01516 706 SMART pbh1 182 203 IPR006626 -
Arst2g01516 706 SMART pbh1 155 180 IPR006626 -
Arst2g01516 706 SMART pbh1 532 553 IPR006626 -
Arst2g01516 706 SUPERFAMILY Pectin lyase-like 396 700 IPR011050 -
Arst2g01516 706 Pfam Pectate lyase 127 302 IPR002022 -
Arst2g01516 706 Pfam Pectate lyase 454 616 IPR002022 -
Arst2g01516 706 PANTHER PECTATE LYASE 18-RELATED 389 662 IPR045032 GO:0030570
Arst2g01516 706 PRINTS Pollen allergen Amb family signature 398 415 IPR018082 -
Arst2g01516 706 PRINTS Pollen allergen Amb family signature 453 469 IPR018082 -
Arst2g01516 706 PRINTS Pollen allergen Amb family signature 600 619 IPR018082 -
Arst2g01516 706 SMART amb_all 425 623 IPR002022 -
Arst2g01516 706 SMART amb_all 99 308 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g01516 Arst-Chr2 29192671 29198724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g01516 420 706 Polysaccharide Lyase AT3G55140 73.171 1.56e-157 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g01516 K01728 - ecad:122607709 988.408