Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g01147 ATGGAGGAAGAGCAGGATCGAATTCTGCTCAACAGTTTGGGCGTTAAGTCGGCGAATCCCGAAGACATTGAACGCCACGTCTTAGAAAAGGCGACTGCTGTTCCCGAAGCTGAAGGGAGTGTGAAGGAAGAAGATTCTAGTGTATCTGGAAATGTTGATCCATCATCTGCTACTAAAGCAGAGCTTAATCAGAAACTGAGGGCAGTGAGATTTGAAATAGATGCAGTAGCGTCTACCATTCAGCAATTGAGAAGTGATGAGAATGATGGAGAATGTGGTGGTGTTGGCGAGGACAGCCAGGAGAAAGGAGTTGCTGAAGGTGGTTCCTCCAATGATTCAAACCTTCAGTGTGTTCTTGCTGCTGATAGGCTACAGAGCCTGAAGAAAACAAAGGCTCAACTAGAGGAAAAGCTTTCGGAGTTCTGTAAGGATGATGTTTCCAAAAATAGTGACCAGGAAAAATTGATATTTGATTTAGTTAAGCAAGATAGAAGACCAAAGAAGAAACTAAAAAAAGAAGATAAAAGGCCACAGAAAAGCTCGGGGAAGCGGCAAAGGATAGTCTCCTTTAATGATGATGCTGATTTTGATGCTGTTTTGGATGCAGCCTCTGCAGGTTTTGTTGAAACAGAGAGAGATGAGTTGGTGAGAAAAGGGGTTCTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGATTTCAACAATCTGCAGCATCAAGTAGCCATAATGCATCTGAGCAAGAAAATACTGGTGATCTTGCTTCTGAAAGTGTTGAAAGGGCTGCTAGATCAATATCCGAGGCAGCAAGAGCTCGCCCAACCACCAAGCTGCTTGAATATGATGCCGTTCCAAAGCTTGATGCCCCCACCTTTCCATTTCAAAGGCTCAGGAAACCACTTAAATTACGAGACAAAGAGGAAGAGGAGAATAAAGATTCCAAGAGGAAAAGGAGGCGGCCTTTGCCTGGCAGGAAATGGACAAGGCGTGTTTCTTGTGAGGATATGCAACATGGAGATAGTGAAAATGCAAATGGTCACTTGGATACTTCTAGTTGTGAAAGTTTGGAAGCTCAAGATGTTGAACTTGCCGATCATGAATCTTCTTATATAACATTAGAAGGTGGACTAAAAATCCCTGATAACATCTTTGATGCACTGTTTGACTATCAGAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGCCTTGGTAAAACTGTCCAGGTCTTATCTTTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAGCCCAGCATTATTATCTGTCCTGTTACACTTTTGAGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCGAAATTTCATGTAGAGCTTTTACATGATTCTGTTCAGGATTCTTCTCCTAGAAAGAAGCAAGCAAATTCTGATGAATCGGACTATGAGAGTGATGTTTCAAACGACAGTGATGATGAAAGAAGTGTACCATCTAGAAACACAAGAAAGTGGAAATCCCTGATAAATCGTGTTTTGAGATCAGAATCTGGTTTACTTATCACCACTTACGAGCAAATCAGAATATTGGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCTGTTCTTGATGAAGGACATAGAATAAGAAATCCTAATGCTGAAGTCACCCTTGTTTGTAAACAGCTACAAACTGTGCACCGCATTATAATGACTGGTGCACCTATTCAGAACAAGCTGTCAGAACTCTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTGTTGCCTGTATTTGAAGCAGAATTTGCAGTTCCTATCGCCGTTGGTGGTTATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTTCGACGCATGAAGGCTGATGTGAATGCGCAGCTTCCAAATAAAACTGAGCATGTCCTATTCTGCAGCCTCACATCAGAGCAAATATCTGCTTATAGAGCATTTTTGGCAAGTTCGGAAGTGGAGCAAATATTGGATGGACACAAGAATTCTCTTTCTGGAATTGATGTGATGCGCAAGATATGCAATCACCCTGACCTACTTGAAAGAGATCATGCCTCAGGTAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAGATTGTAGCTCAAGTGCTCAATGCTTGGAAGGAACAAGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTCGACATTCTTGAGAATTTTTTATCTACTTCTGGTCATATGTATCGGAGAATGGATGGTCTTACTCCCGTAAAACAGAGAATGGCTTTAATAGACGAATTTAATGCCTCAAATGATATATTTATTTTTATTCTAACAACCAGAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAAACAGGGTGATAATCTTTGACCCTGATTGGAATCCTTCAAATGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGATGTAACAGTGTATAGGTTGATCACACGAGGAACTATAGAGGAGAAAGTTTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAAATACTCAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACATTGAATGTGGATGGAGAAACTGGGTCTACTGAAACATCAAATATTTTCGGCCAAATATCTGAAGAAGTAAATATGGTTGGGACACACACAAACAACCAGGAGAATAATAAATTTAGCAAGACTACTGAACCGGTTTCTGAAGATGTTGCAGCTGATAATGATGACCAATCACAGAGCGGATCTCCGAATGGAAAGGGCAAAGGGAAAGCGGAACATGGTGACGGGGTTGATGAGGAAACAAATATATTGAAGAGTCTTTTTGGTGCCAATGGGATACATAGTGCCTTGAACCATGATATGATCATGAATGCCAATGATGAGGAGAAACTGAGGCTTCAGGAGGAAGCATCCAAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAATCACGAATGCTCCGAAGCCACGACAGCGTCTCTGTTCCTACATGGACAGGAAGGTCTGGAGCTGCTGGTGCACCAGCATCTGTTAAGCGGAAATTTGGTTCAACTGTGAATACCCAGTTGATAAAAAATAACAAAGCATCTGATGGATCACCCAACAATGGAACTAAAAAATTGAATGGATTTGCTGCTGGAGCGACGTCCGGGAAGGCATTATCTTCTGCTGAACTTTTGGCAAGAATTCGAGTTAACCAAGATAATGCCATTGGTGCTGGCCTCGAACATCAATTTGGTACAAGCTCAAGTTCAATTAATCAAGCAAGATCTACAGATGTCAGATCTTCTAGAGCTTCTGAAAATATGTCTGGCTCGCAACCTGAAGTATTAATTCGTCAGATATGTACATTTCTACAACAGCATGGCGGCAGTTCCAGTTCAGCCAGCATAGTTCAGTATTTCAAGGACAGAATACCCTCCAAAGATCTTGCTTTATTCAAGAATCTGTTAAAGGAAATAGCTACTCTGCATAAAGGGCCTAGTGGATCGAATTGGGTTCTGAAGCCAGACTACCAATAA 3654 0.419 MEEEQDRILLNSLGVKSANPEDIERHVLEKATAVPEAEGSVKEEDSSVSGNVDPSSATKAELNQKLRAVRFEIDAVASTIQQLRSDENDGECGGVGEDSQEKGVAEGGSSNDSNLQCVLAADRLQSLKKTKAQLEEKLSEFCKDDVSKNSDQEKLIFDLVKQDRRPKKKLKKEDKRPQKSSGKRQRIVSFNDDADFDAVLDAASAGFVETERDELVRKGVLTPFHKLKGFERRFQQSAASSSHNASEQENTGDLASESVERAARSISEAARARPTTKLLEYDAVPKLDAPTFPFQRLRKPLKLRDKEEEENKDSKRKRRRPLPGRKWTRRVSCEDMQHGDSENANGHLDTSSCESLEAQDVELADHESSYITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREAKKWYPKFHVELLHDSVQDSSPRKKQANSDESDYESDVSNDSDDERSVPSRNTRKWKSLINRVLRSESGLLITTYEQIRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTSEQISAYRAFLASSEVEQILDGHKNSLSGIDVMRKICNHPDLLERDHASGNPDYGNPERSGKMKIVAQVLNAWKEQGHRVLLFTQTQQMLDILENFLSTSGHMYRRMDGLTPVKQRMALIDEFNASNDIFIFILTTRVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNIFGQISEEVNMVGTHTNNQENNKFSKTTEPVSEDVAADNDDQSQSGSPNGKGKGKAEHGDGVDEETNILKSLFGANGIHSALNHDMIMNANDEEKLRLQEEASKVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGAAGAPASVKRKFGSTVNTQLIKNNKASDGSPNNGTKKLNGFAAGATSGKALSSAELLARIRVNQDNAIGAGLEHQFGTSSSSINQARSTDVRSSRASENMSGSQPEVLIRQICTFLQQHGGSSSSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGPSGSNWVLKPDYQ 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g01147 1217 MobiDBLite consensus disorder prediction 235 269 - -
Arst2g01147 1217 Pfam SNF2-related domain 390 712 IPR000330 GO:0005524|GO:0140658
Arst2g01147 1217 MobiDBLite consensus disorder prediction 30 59 - -
Arst2g01147 1217 PANTHER SNF2/RAD54 FAMILY MEMBER 164 1200 - -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 83 112 - -
Arst2g01147 1217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 399 598 IPR014001 -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 235 255 - -
Arst2g01147 1217 Gene3D - 356 647 IPR038718 -
Arst2g01147 1217 FunFam DNA excision repair protein ERCC-6 655 933 - -
Arst2g01147 1217 CDD DEXHc_ERCC6 387 597 - -
Arst2g01147 1217 CDD CSB_WHD 1150 1217 - -
Arst2g01147 1217 Pfam Helicase conserved C-terminal domain 732 844 IPR001650 -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 927 941 - -
Arst2g01147 1217 SMART ultradead3 383 606 IPR014001 -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 1126 1149 - -
Arst2g01147 1217 Gene3D - 654 947 IPR027417 -
Arst2g01147 1217 FunFam Protein CHROMATIN REMODELING 8 365 647 - -
Arst2g01147 1217 Coils Coil 1007 1027 - -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 44 59 - -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 298 350 - -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 472 503 - -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 1036 1057 - -
Arst2g01147 1217 SMART helicmild6 761 844 IPR001650 -
Arst2g01147 1217 CDD SF2_C_SNF 730 855 - -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 165 187 - -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 327 342 - -
Arst2g01147 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 648 IPR027417 -
Arst2g01147 1217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 894 IPR001650 -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 298 317 - -
Arst2g01147 1217 MobiDBLite consensus disorder prediction 927 973 - -
Arst2g01147 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 907 IPR027417 -
Arst2g01147 1217 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g01147 Arst-Chr2 15200701 15206944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g01147 380 897 RAD5 or RAD16-like Gene Family AT1G02670 22.987 1.57e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst2g01147 SNF2_N 1.2e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g01147 K10841 - gmx:100820025 1923.29