Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst2g01053 | ATGGCAGATTCTGATGAAGTGGCAAAATCTGCTGAAAACCAGCAAACAGAGCAAGTGTGCAGCTTCTTCAGGAAACCAATTAATAAGAAGAATATAAGGAAACGTGCTATTGATAGTGAAGATGAGGGTGATGATTCAAAAAATGAAAACTCTTTGTTGCATGCTCAGAAGAAGGCTCCGAAGCCTGACAATAAGTTGTACTTTTCAACTGGCCCCTCGAAAAGCTGTGTGTCTACTGACCCAAGTGAAGAATCTGAAAAAACCGGTTTTCATTTCGAGTCTTCGAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTCTAGAGACAGAGACCGACTTTTCCAGAGATGCTCGTGCGATCCGTGAACGAGCTCTTAAGCAAGCAGAAGAGAGTTTGAAGGGGAAAGGCACAAGTTCTGAGGATGGCAAACTATATAAGGGAATGAACAGTTACAAAGATTACAAGGCCGGCTTCCGGAGAGAGCAAACAATTGCTAGCGAAAAGGCTGGTGGTTCACATGGTCCTCTCAGGGCTTCGGCTCATATAAGAGTTTCAGCGAGATTCGATTATCAGCCTGATATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCCTGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGATGGCAGTTGGAGAAGGAATGGGATGAAGCTGAGAAGGCAAGGAGGATGAGATTGGCTGCAGGTGAAGATGCGGACGAGGAAAGTGCTGATTTAGCTGATAGTGACGATGAAGATGCATTGCCATTTGCATGTTTTATTTGTAGGAAGCCTTTTGCGGATCCTGTTGTAACCAAGTGCAGGCACTACTTCTGTGAGCATTGCGCCTTAAAGCATCATGCAAAGAACAAGAAGTGTTTTGTGTGCAACCAACCAACTCTCGGCATTTTCAATGTTGCCCATGAGATACGAAAGAAGATGGCTGAGGATAAAGATAAATGA | 993 | 0.4361 | MADSDEVAKSAENQQTEQVCSFFRKPINKKNIRKRAIDSEDEGDDSKNENSLLHAQKKAPKPDNKLYFSTGPSKSCVSTDPSEESEKTGFHFESSKEIQVQHDSKATATLETETDFSRDARAIRERALKQAEESLKGKGTSSEDGKLYKGMNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARRMRLAAGEDADEESADLADSDDEDALPFACFICRKPFADPVVTKCRHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDKDK | 330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst2g01053 | 330 | ProSitePatterns | Zinc finger RING-type signature. | 284 | 293 | IPR017907 | - | |
| Arst2g01053 | 330 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 193 | 218 | IPR000571 | GO:0046872 | |
| Arst2g01053 | 330 | SUPERFAMILY | CCCH zinc finger | 191 | 223 | IPR036855 | GO:0046872 | |
| Arst2g01053 | 330 | Gene3D | - | 190 | 224 | - | - | |
| Arst2g01053 | 330 | SMART | c3hfinal6 | 192 | 219 | IPR000571 | GO:0046872 | |
| Arst2g01053 | 330 | FunFam | Zinc finger CCCH domain-containing protein 1 | 190 | 224 | - | - | |
| Arst2g01053 | 330 | Pfam | Zinc finger, C3HC4 type (RING finger) | 268 | 310 | - | - | |
| Arst2g01053 | 330 | SUPERFAMILY | RING/U-box | 268 | 311 | - | - | |
| Arst2g01053 | 330 | MobiDBLite | consensus disorder prediction | 80 | 100 | - | - | |
| Arst2g01053 | 330 | ProSiteProfiles | Zinc finger RING-type profile. | 269 | 307 | IPR001841 | - | |
| Arst2g01053 | 330 | MobiDBLite | consensus disorder prediction | 32 | 61 | - | - | |
| Arst2g01053 | 330 | CDD | RING-HC_RNF113A_B | 262 | 315 | - | - | |
| Arst2g01053 | 330 | SMART | ring_2 | 269 | 306 | IPR001841 | - | |
| Arst2g01053 | 330 | ProSiteProfiles | Zinc finger C3H1-type profile. | 192 | 220 | IPR000571 | GO:0046872 | |
| Arst2g01053 | 330 | PANTHER | ZINC FINGER PROTEIN 183 | 14 | 329 | IPR039971 | - | |
| Arst2g01053 | 330 | MobiDBLite | consensus disorder prediction | 31 | 118 | - | - | |
| Arst2g01053 | 330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 326 | IPR013083 | - | |
| Arst2g01053 | 330 | FunFam | RING finger protein 113A | 267 | 326 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst2g01053 | 10 | 330 | C2H2 Transcription Factor Family | AT1G01350 | 70.717 | 1.95e-170 | 475 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Arst2g01053 | zf-C3HC4_3 | 4.6e-09 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst2g01053 | K13127 | - | gmx:100787434 | 555.829 |