Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00879 ATGTTCCCAGCAGTTATGTCCAATTCTACTTCTTTGTCTGAAGAAGCAAGTGTCTCTTCTGGCACAAGAATTCAAGACTTTGGTGCTACCTTAAACCATGTTGTTTCAACAATTTCTCCTCATCAACAACAACAACAACAACAACCTCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGGTTTGTGTGTGAGATCTGTAACAAAGGGTTCCAAAGGGATCAAAACCTTCAGCTTCATAGAAGAGGGCACAATCTTCCATGGAAGCTGAAGCAAAGGAACAACAAAGAAGTGAAGAAGAGAGCATATGTTTGCCCTGAACCTTCATGTGTCCATCACAATCCTTCAAGGGCTCTTGGGGACCTCACTGGAATCAAGAAGCATTATTGTAGAAAACATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGATCTATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAAACTTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCTGAAGAGAGTGCAAGAGTTTCAGCAAACCAGCATCAATTAATCACAACACCTTCAAATCCATTACTCCAATCCCTCTTCCTTTTCCCAACCCAAAACAACTTCATCAATCCATGGGACCCACAATCATCTCAAGAAAACCCTAACCCTAATAATAATAATACACTTCTTCATAACATCAACATTAAGCCTGAAGTTCAAAACTTTCACATCCCAAATTCCGATAATGCCCCTCCATTGTTCCTTCACCAAAACCCCAGCAAGAATAACACCATCATGATGACGTCACCCTTCAGGAACAACCCGCACGTGCGCATGCAACCACAATCCAACAGTGCTAATAATGCTGCTGCTGCTGCCACGTCAGCACATCTCTCAGCCACTGCACTCCTCCAGAAGGCCGCGACGGTGGGCGCGGCCGCCATCACGGGCCCTAATGCCTCACTTGGAGTTGGCCAGCACGTGACTCGTCACGTGACTGAGCTTGGCGACATGACTCAGCTTGACTCGGTTCATTTCATGAACAACATGGGAGTGGGAGGGTTTAACAACAACACAAGGAGCCTCAAGAGTAGTGATGATCTTACAAGAGACTTTCTAGGGTTAACCGGAGATAACAACGGCGGAAGAGGCGGCAGCTGTGACGGAGGAAATGCTGGCGCAGTTGACGTTAGCATGAACGTGAAGGACATGCTAACGTACACCGGAAACATAGATTACCAACAACAACACCACCATCATCTTCGACACCCGTTGTTTAAGTCACCACAACAAGGTTTTGGATTTCTTGGAACAACAACTGCCCCAGAATCATGGGGCAATTGTTGA 1458 0.4499 MFPAVMSNSTSLSEEASVSSGTRIQDFGATLNHVVSTISPHQQQQQQQPPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARVSANQHQLITTPSNPLLQSLFLFPTQNNFINPWDPQSSQENPNPNNNNTLLHNINIKPEVQNFHIPNSDNAPPLFLHQNPSKNNTIMMTSPFRNNPHVRMQPQSNSANNAAAAATSAHLSATALLQKAATVGAAAITGPNASLGVGQHVTRHVTELGDMTQLDSVHFMNNMGVGGFNNNTRSLKSSDDLTRDFLGLTGDNNGGRGGSCDGGNAGAVDVSMNVKDMLTYTGNIDYQQQHHHHLRHPLFKSPQQGFGFLGTTTAPESWGNC 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00879 485 FunFam protein indeterminate-domain 5, chloroplastic-like 137 216 - -
Arst2g00879 485 Gene3D Classic Zinc Finger 62 131 - -
Arst2g00879 485 Pfam Zinc finger, C2H2 type 83 105 IPR013087 -
Arst2g00879 485 SMART c2h2final6 83 105 IPR013087 -
Arst2g00879 485 SMART c2h2final6 124 154 IPR013087 -
Arst2g00879 485 SMART c2h2final6 159 179 IPR013087 -
Arst2g00879 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Arst2g00879 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 435 IPR031140 -
Arst2g00879 485 MobiDBLite consensus disorder prediction 38 53 - -
Arst2g00879 485 SUPERFAMILY beta-beta-alpha zinc fingers 82 179 IPR036236 -
Arst2g00879 485 Gene3D Classic Zinc Finger 152 222 - -
Arst2g00879 485 FunFam protein indeterminate-domain 12-like 62 130 - -
Arst2g00879 485 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Arst2g00879 485 MobiDBLite consensus disorder prediction 38 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00879 Arst-Chr2 10123061 10128238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00879 15 450 IDZ Gene Family AT4G02670 48.775 4.04e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst2g00879 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00879 K25870 - gmx:100780056 587.03