LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst2g00877	ATGCTTCACGCTCCACTACAATCATCGCTTCTCTTCGTTTCCTTCTTAGGGTTTCTTATTCTTCTTTCCATAATCAAAATCCCTTGCGTTCGCGGAGAGTCTTCCACCTGCTTGACGGTTTACAGAAACGGCGGTGCTCCCGCGGTCTTTAAATCCCCGAAATGTCCCCGATGGAAGCTTCCCGAAGGCCAAGGTGAAGACGACGATTCCGATTACCACCGTAGTCGCCGATCTCCGCCTCATGCGACGCCGCGTTGCCAGTCCGCCATGCTCCAGGGCAGCCGTTCCTCCCAGGAGGACCGCACTCTCTGCGTCCTCGATCTCCGGATTCCGTTTCCCGATGCGGATGGGATCAGGGAGGTTGCGGTGGGACTCGTGGCAGTTTTTGACGGGCACAATGGTGCTGAAGCTAGTGAAATGGCGTCAAAGCTTCTGATGGAGTATTTTGTATTGCACACCTATTTTTTACTTGATGCAGCTTTTTCTGTTATATCAAAAACAAGGGGAGCAGTGCATCACCAGAGAGAGCACAATCGTTTGAACATGATGCGTAGGTGGAAGGAGATTCTAGGTTGGCATGAGCTGCATTTTGAAAGGTTCCAAAATACATTTTCTGCAAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCATTATTGAGAGCTATCCATGATATTGATGCAAAATTTTCTGAGGAAGCCTTCAGAAATAGTCTTCATTCAGGGTCTACGGCAATCATTATATTGATGGCAGATGATAACATTTTAGTTGCCAATATTGGAGATTCTAAGGCTTTCTTGTGCTCTGAAAATTTTCAGTCTCCTAGAGAGGCCAAAGACTTATTACTGAAGCAATATAGGCAGAAAGAGCTTGATGGTTCTGTTGCTGTGTGGAATCGTGAAAAGTATAAGTTAGCTTCCTCCCATGGACTGACTCATTTTGCTGTAAAAGAATTGACCAGTGATCATCACCCAGACAGAGATGATGAAAGGATTCGGGTGGAAGCAGCTGGTGGGCAAGTTATAAATTGGGGGGGAGTGCCTCGTGTAAATGGCCAGCTGGCTATTACACGGGCAATTGGTGATGTATTCTTTAAAAGGTACGGTGTTATATCTGTGCCAGAAGTGACTGATTGGCAGCCTCTGACTGCCAATGATAGCTATTTAGTGGCTGCATCCGATGGTGTTTTTGAGAAGATGAGCATGAGTACGGATAATGTGGCCGCCATTGTTGTTCCTCTGGAATCTGCCAAAGTTTCTGCAAACTCGCTTAGGAGAAGCTATATTGAGAAGAGGGATGCTGATTATCCTCTGCTTGCATTGCAGGAACTTGCTTCAAGAAGTTTAGCTAATGACGTCATATCTGATGTAATGCACTTGAGGCATCCTCATGCGGTGGATACCAAGTTTAAGCGTATATTGGTTGAAGTGAAACATGGAGATTTTGGATGTTTTTATTTGTCTGAAAATCTTGATGAACTTGTGGACTCTAAGCAGCCTACCAAAAGTACTGACTGGGAAGATTATTTATATGAACTACCTCAGCCTGTACCAGATACACATCAACATTCTGTAAATGGTCCAGTATATTTGTATGATAACCAAAACTTCTGCTTACAACTTGGTCCGACTGTTAATGAATCTAAGGAACAATGCATAAATCCTGAAGCATTTGCAAATTTTATTGGTCTTCTTGAATCAATTCCTTTACATGATACTGGTTCACATAATGGATCCTCTGGTTATTCAATGCCTGAATCAAGGTACAAACTAAAGAAGAGTTTCGGTCGTGGATCATATGGTGAAGTATGGTTAGCTTTTCATTGGAATTGTAATGAAGGGATTAATGCTGCAGAAATGAGCAACAATGACAATAATAGAAACGACAGCTCAAACACCAATGATTTCCAGGATGCTTCCACTAACTATACTCTGTACATTTTGAAGCGTATAATGGTAGAGAGAGGGTCTGCTGTTTACTTAAGTGGCCTGAGGGAGAAATATTTTGGAGAAACTTTTTTAAATGCCTCCTCAAGCTTTGAAGATCTGCTATCAGCTGAAAAACCAAACTGTCTCTTGGAAACATCACAATTTGGGTTTGAGAATACATTTTCAAACAGGTCAAAAAGATCTGTATATGAAGAAGGCTTGAACCATATTGTAAGATATGTGGAGTCTTTTGAATCTCGGTCCAATGAAATTTGGCTTGTATTCAGTTTTGAAGGCGTATCGTTGTCTAAACTTTTGCATACTGTGGAAGATCCATATGATACTGCTGAGAAAGAAAAGACTGAGCAAGTAAAACATGTCCAAATACTGCGTCCATCGAAGTGGTGGCATTGGTTGAAAACAACAGAAGAAGGGCAAGAGGAAATGCGCAACCTTATCTGGCAGCTGTTTCTGGCGCTGAAATCATGTCACGATCGCAATATTACACACAGGGACATTAAACCTGAAAATATGGTGATATGCTTTGAAGATCAGGAGACTGGAAGATGTTTGAAAGATATACCGACTAAACTAAATAGTTTCTCCACCAAAATGCGTGTTATAGACTTTGGCAGTGGAATTGATGAATTCACATTGAAGCATTTATATGGTTCAACTGGGCCTTCTAGGGCTGAACAAACTTATGAGTATACACCTCCTGAAGCTTTGCTAAATGCTACGTGGTATCAAGGCCCAACAAGCTCAACTTTGAAATATGACATGTGGAGTGTTGGTGTTGTAATGTTAGAGTTGGTCTTAGGGACACCAAATGTTTTCCAGATCGATGCTTTAACACAAACTCTTTTGGACCAGCATCTTGACGGCTGGAATGAGGGTGTGAAGGAGCTGGCTTACAAACTCAGATCATTCATGGAATTGTGTATCTTAATCCCTGAGATATCCAGAAGTTCCTCAAAAAAGTATCACACAGCTAACCAGGCTGGCGTTTCACCTGCATCTTGGAAATGCTCGGAAGAATTCTTTTCTCATCAAATAAAGAGCCGAGATCCTCTTAAAATAGGTTTTTCAAATATCTGGGCGTTGCGGTTAGTGCGCCATCTGTTACAGTGGGACCCAGAGGACCGGATAAGCGTTGATGAGGCATTGCAGCATCCCTATTTCCAACCTCCCCCGAGAGGATGA	3138	0.4238	MLHAPLQSSLLFVSFLGFLILLSIIKIPCVRGESSTCLTVYRNGGAPAVFKSPKCPRWKLPEGQGEDDDSDYHRSRRSPPHATPRCQSAMLQGSRSSQEDRTLCVLDLRIPFPDADGIREVAVGLVAVFDGHNGAEASEMASKLLMEYFVLHTYFLLDAAFSVISKTRGAVHHQREHNRLNMMRRWKEILGWHELHFERFQNTFSANFDDSFHLEILKEALLRAIHDIDAKFSEEAFRNSLHSGSTAIIILMADDNILVANIGDSKAFLCSENFQSPREAKDLLLKQYRQKELDGSVAVWNREKYKLASSHGLTHFAVKELTSDHHPDRDDERIRVEAAGGQVINWGGVPRVNGQLAITRAIGDVFFKRYGVISVPEVTDWQPLTANDSYLVAASDGVFEKMSMSTDNVAAIVVPLESAKVSANSLRRSYIEKRDADYPLLALQELASRSLANDVISDVMHLRHPHAVDTKFKRILVEVKHGDFGCFYLSENLDELVDSKQPTKSTDWEDYLYELPQPVPDTHQHSVNGPVYLYDNQNFCLQLGPTVNESKEQCINPEAFANFIGLLESIPLHDTGSHNGSSGYSMPESRYKLKKSFGRGSYGEVWLAFHWNCNEGINAAEMSNNDNNRNDSSNTNDFQDASTNYTLYILKRIMVERGSAVYLSGLREKYFGETFLNASSSFEDLLSAEKPNCLLETSQFGFENTFSNRSKRSVYEEGLNHIVRYVESFESRSNEIWLVFSFEGVSLSKLLHTVEDPYDTAEKEKTEQVKHVQILRPSKWWHWLKTTEEGQEEMRNLIWQLFLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKDIPTKLNSFSTKMRVIDFGSGIDEFTLKHLYGSTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPNVFQIDALTQTLLDQHLDGWNEGVKELAYKLRSFMELCILIPEISRSSSKKYHTANQAGVSPASWKCSEEFFSHQIKSRDPLKIGFSNIWALRLVRHLLQWDPEDRISVDEALQHPYFQPPPRG	1045

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst2g00877	1045	MobiDBLite	consensus disorder prediction	60	78	-	-
	Arst2g00877	1045	ProSiteProfiles	PPM-type phosphatase domain profile.	85	462	IPR001932	-
	Arst2g00877	1045	MobiDBLite	consensus disorder prediction	81	95	-	-
	Arst2g00877	1045	Pfam	Protein kinase domain	721	1039	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst2g00877	1045	Gene3D	-	81	456	IPR036457	-
	Arst2g00877	1045	CDD	PP2Cc	92	453	IPR001932	-
	Arst2g00877	1045	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	813	825	IPR008271	GO:0004672\|GO:0006468
	Arst2g00877	1045	SMART	PP2C_4	77	414	IPR001932	-
	Arst2g00877	1045	Pfam	Protein phosphatase 2C	216	403	IPR001932	-
	Arst2g00877	1045	Gene3D	Transferase(Phosphotransferase) domain 1	779	1040	-	-
	Arst2g00877	1045	SUPERFAMILY	Protein kinase-like (PK-like)	588	1041	IPR011009	-
	Arst2g00877	1045	FunFam	uncharacterized protein LOC106771884 isoform X8	779	1040	-	-
	Arst2g00877	1045	MobiDBLite	consensus disorder prediction	60	95	-	-
	Arst2g00877	1045	ProSiteProfiles	Protein kinase domain profile.	591	1039	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst2g00877	1045	SUPERFAMILY	PP2C-like	83	417	IPR036457	-
	Arst2g00877	1045	PANTHER	PROTEIN PHOSPHATASE	75	414	IPR015655	GO:0004722\|GO:0006470
	Arst2g00877	1045	SMART	serkin_6	591	1039	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst2g00877	Arst-Chr2	10002873	10017276	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst2g00877	655	1043	PP2C-type Phosphatase Gene Family	AT3G63340	65.473	1.64e-179	526

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSKL	Arst2g00877		Pkinase	3.3e-25	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst2g00877	-		-	gmx:100781476	1637.08