Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00749 ATGGCTATTATAACAACAACAAAGAGGACTGAAGGGTTCCGTCGTACAACACCACCAACATGCAAGTATTGGCAAGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCGTCCAATGTATACTATAATGCCAATACCACATATAAGCATTCGAAGATGGCCAGTTCCTCTGCTAAGAAGGCCATCAAGAAGCCAGAAAATTGTGCACTAAGGGCTGTTGAGTATAGACCAGAAGCTATGTCTGTTGAGAAGCCAACTAAGTGTGAACAAAAGGCTGTTGCAGATGTGGAAGATGTGGCCACTGTTGCTAAGTGTGAACAAAAGGCTGTATTGATTGAAAAGACTGCAGACGTAGAAGATGTGACCACTGTGGATAAATCACGCAATATTTGCAAAGATTGGATGACTGACAATTGTGTGCATGGTGACTTGTGTCAGAATTTGCATTCATGGTTTTATGGCGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAACAAGGCAATCACTGGGATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGGGCATGGGACTGCAACACTGGCCGTTGTGTTCACATGATCCATCTTAATTCTCAAGTTACCTCACTCATATCTGAGGGCCCATGGATTTTTGCCGGTGTGAAAAATGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGTCTCCTTTCAAAATGGTTGCAACACTAAGTGGTCATAGTAAACCAGTGGTTTCTCTTGCTATTGGATGTCACAAGATGCTTTATTCTGGATCCATGGACCATACCATTAAGGTTTGGGACCTTGATACATTACAGTGCACAATGACACTTAACGGCCATACCGACGTTGTCACATCACTTATTTGCTGGGACAATTTCTTGTTATCGGCTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACTGAGGAGGGAACTCTAGAAGTGACATACACTCACACTCACGAAAATGCTGTTCTTGGACTCTATGGGATGACTGATGCAGAGGCCAAGCCAATATTGTTCTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAATTGCCGACGTTTCTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTTGGGATAGGCCCTGGCGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTAAATGTGTGGAAATGGTTAGAAGAGCCTAAGGTGCCAACATAG 1380 0.4406 MAIITTTKRTEGFRRTTPPTCKYWQAGRCNRNPCQFSHSLPTSPSNVYYNANTTYKHSKMASSSAKKAIKKPENCALRAVEYRPEAMSVEKPTKCEQKAVADVEDVATVAKCEQKAVLIEKTADVEDVTTVDKSRNICKDWMTDNCVHGDLCQNLHSWFYGDGFSTLAKLHEHNKAITGIALPAGSNKLISGSTDGTVRAWDCNTGRCVHMIHLNSQVTSLISEGPWIFAGVKNAVKAWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFESPFKMVATLSGHSKPVVSLAIGCHKMLYSGSMDHTIKVWDLDTLQCTMTLNGHTDVVTSLICWDNFLLSASSDCTVNVWVCTEEGTLEVTYTHTHENAVLGLYGMTDAEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFGIGPGGLFFTGDGTGLLNVWKWLEEPKVPT 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00749 459 SMART c3hfinal6 133 158 IPR000571 GO:0046872
Arst2g00749 459 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Arst2g00749 459 Gene3D - 289 457 IPR015943 GO:0005515
Arst2g00749 459 Gene3D - 149 288 IPR015943 GO:0005515
Arst2g00749 459 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Arst2g00749 459 PRINTS G protein beta WD-40 repeat signature 350 364 IPR020472 -
Arst2g00749 459 PRINTS G protein beta WD-40 repeat signature 189 203 IPR020472 -
Arst2g00749 459 SUPERFAMILY WD40 repeat-like 154 450 IPR036322 GO:0005515
Arst2g00749 459 SMART WD40_4 163 202 IPR001680 GO:0005515
Arst2g00749 459 SMART WD40_4 369 410 IPR001680 GO:0005515
Arst2g00749 459 SMART WD40_4 413 450 IPR001680 GO:0005515
Arst2g00749 459 SMART WD40_4 242 279 IPR001680 GO:0005515
Arst2g00749 459 SMART WD40_4 285 323 IPR001680 GO:0005515
Arst2g00749 459 SMART WD40_4 326 363 IPR001680 GO:0005515
Arst2g00749 459 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Arst2g00749 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 211 IPR001680 GO:0005515
Arst2g00749 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 326 - -
Arst2g00749 459 PANTHER - 26 458 IPR044715 -
Arst2g00749 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 202 - -
Arst2g00749 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 362 IPR001680 GO:0005515
Arst2g00749 459 Pfam WD domain, G-beta repeat 328 362 IPR001680 GO:0005515
Arst2g00749 459 Pfam WD domain, G-beta repeat 166 202 IPR001680 GO:0005515
Arst2g00749 459 Pfam WD domain, G-beta repeat 288 323 IPR001680 GO:0005515
Arst2g00749 459 ProSitePatterns Trp-Asp (WD) repeats signature. 310 324 IPR019775 -
Arst2g00749 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 332 IPR001680 GO:0005515
Arst2g00749 459 ProSiteProfiles Zinc finger C3H1-type profile. 132 159 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00749 Arst-Chr2 7991818 7995452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00749 169 410 Acyl Lipid Metabolism Gene Families AT3G18860 24.806 2.34e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst2g00749 WD40 0.0043 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00749 - - aip:107624831 808.905