Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00627 ATGGCTTCTTCCCATGCAATAATCCCAGACAAAGCAACACGTAAAAGGAAGATTGAGATCAAAAGAGTTGAACAAAGCAACAAGCGCCACGTCACCTTCTCCAAGAGAAAATTAGGGCTTTTCAACAAGGTCACCGAGCTCTCCATCCTTTGCCAGGCGGAAACCGCCTTGATCGTCTCCTCGCAAATCGGAAAGCTTTACGCCTGCGGATATCCATCGCCGGACGCCAAGAAGCAAGAGGAGAAAGTGGAAGTCCTAAGAGCACAATATGAGTCTTTGGAAGAAGCTCTCAAAGAAGAGAAGAAGCGACTCGAAGAGGCTGAGAATGCAAGAAAGAACCATAACAACAATGGCGGTTGCTTAGGGTTTTCATCGCAGTGGTGGGAGAATCCAATTGATGATATGGATTTGGAGGAGCTCGTTAAGTTCAAAGAATCCTTGGAACAGTTGAAGGTTAACCTATTTGCAACCGCTGAAAAGAAGATCATGTTCCAAGAATTGATGCCATCACCACTTGTTTCTTCTTCTTCAGTTATGGCTCCAATGCAAACTAGGGTTCCCAATTTCTCTTCAATATTGAACAATTATGGTGGATTCAACGCTGTTCATCATCCACAACAGCAAGAACATTGGGATTATGCTTCTTCTTCTTCTTCTAATTTTTATTCAACCTTGAAGAATAATGTTGGATTCAACGCGGTTCATCATCCACAACAGCAAGCACATTGGGATTATTGGAACAATAATGGAATTGCTAGCAGTAACAATCAGGATTCTTTAGGATCATGCGATTTTGGGAACAATGCTATAATTGCTGCCGCTAAAGGTAATGGTAATAGTAGTTGTTCCTTTTTTCCTAGCATTGGTTTTGGCCATTATTAA 882 0.4195 MASSHAIIPDKATRKRKIEIKRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALIVSSQIGKLYACGYPSPDAKKQEEKVEVLRAQYESLEEALKEEKKRLEEAENARKNHNNNGGCLGFSSQWWENPIDDMDLEELVKFKESLEQLKVNLFATAEKKIMFQELMPSPLVSSSSVMAPMQTRVPNFSSILNNYGGFNAVHHPQQQEHWDYASSSSSNFYSTLKNNVGFNAVHHPQQQAHWDYWNNNGIASSNNQDSLGSCDFGNNAIIAAAKGNGNSSCSFFPSIGFGHY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00627 293 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Arst2g00627 293 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Arst2g00627 293 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Arst2g00627 293 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 182 - -
Arst2g00627 293 Gene3D - 26 95 IPR036879 GO:0003677|GO:0046983
Arst2g00627 293 SUPERFAMILY SRF-like 14 76 IPR036879 GO:0003677|GO:0046983
Arst2g00627 293 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Arst2g00627 293 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Arst2g00627 293 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 68 IPR002100 GO:0003677|GO:0046983
Arst2g00627 293 Coils Coil 76 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00627 Arst-Chr2 6370605 6371588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00627 11 177 Type I MADS-box Gene Family AT5G60440 30.526 1.86e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst2g00627 SRF-TF 4.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00627 - - ahf:112729126 504.982