Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst2g00626 | ATGGAGGGAAGTTCTTCTTCTTCTTCTCAATTCTCAGAGTCTTTTTCTGATGTAGATGATTCACTACTCTTAGTTGATGATTTCTACTTCTCAGCTCTCTTTGATTCTGAAGAATTATTCCCAATCAATGATGAAAAATATGCAGAGGAACTACATTTACAAGAAGCTCTGTATTCTTCAGTTATAAGCCTCAAGAGAAAACTCAAAGAGGTTCATTCTGAATCTTCTACTCATCAAACTCATCATCATCGTCCTAGTTATCTTCATGATCATCAAGTATTCTTGTGTGCTATTTGCATGGATTCAAAACCATCCCAAGAGATTTTCATCAACCAAAACTGCAACCACTCATTCTGTGATGAATGCATTGCAAAATATGTAGCTGCAAAGATTCAAGAGAATATATCAAATGTGAAGTGTCCTGAACCAAAATGCAAAGGAATATTGGAGCCGCAGAATTGCATGTCAATAATTCCAAAGGAAGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTTGTTCTTGCAACATCAAAGAAATTCTATTGCCCTTTCAAGGATTGTTCAGCAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTCCGAGTGTCCACATTGTCATAGATTGTTCTGTGCACGGTGTAGAGTTGCATGGCATGCTGGAATGGAATGTGGGGAGTTTATGAGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATCAATCTTGCAAAGGCCAAGAGATGGAGAAGGTGTTCTAAATGCAGAATCTATGTTGAAAAGAATGAGGGATGTTCACACATTTCTTGCAGGTGTGGCCATCACTTTTGCTATGCTTGTGGAAAGCCATGGAATCAGTACCATGGTTGTACATAA | 894 | 0.3792 | MEGSSSSSSQFSESFSDVDDSLLLVDDFYFSALFDSEELFPINDEKYAEELHLQEALYSSVISLKRKLKEVHSESSTHQTHHHRPSYLHDHQVFLCAICMDSKPSQEIFINQNCNHSFCDECIAKYVAAKIQENISNVKCPEPKCKGILEPQNCMSIIPKEVFERWENALCENLVLATSKKFYCPFKDCSAMLVNDDGNEVVTCSECPHCHRLFCARCRVAWHAGMECGEFMSLNENEREKEDLMVINLAKAKRWRRCSKCRIYVEKNEGCSHISCRCGHHFCYACGKPWNQYHGCT | 297 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst2g00626 | 297 | Gene3D | - | 182 | 230 | - | - | |
| Arst2g00626 | 297 | SMART | ring_2 | 96 | 145 | IPR001841 | - | |
| Arst2g00626 | 297 | CDD | Rcat_RBR_unk | 254 | 290 | - | - | |
| Arst2g00626 | 297 | ProSiteProfiles | Zinc finger RING-type profile. | 96 | 144 | IPR001841 | - | |
| Arst2g00626 | 297 | CDD | BRcat_RBR_unk | 179 | 231 | - | - | |
| Arst2g00626 | 297 | ProSiteProfiles | TRIAD supradomain profile. | 92 | 297 | IPR044066 | - | |
| Arst2g00626 | 297 | Gene3D | - | 231 | 297 | - | - | |
| Arst2g00626 | 297 | SUPERFAMILY | RING/U-box | 90 | 173 | - | - | |
| Arst2g00626 | 297 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 178 | IPR013083 | - | |
| Arst2g00626 | 297 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 70 | 290 | IPR031127 | GO:0004842|GO:0016567 | |
| Arst2g00626 | 297 | ProSitePatterns | Zinc finger RING-type signature. | 114 | 123 | IPR017907 | - | |
| Arst2g00626 | 297 | FunFam | RBR-type E3 ubiquitin transferase | 91 | 177 | - | - | |
| Arst2g00626 | 297 | Pfam | IBR domain, a half RING-finger domain | 164 | 228 | IPR002867 | GO:0008270 | |
| Arst2g00626 | 297 | Pfam | IBR domain, a half RING-finger domain | 249 | 296 | IPR002867 | GO:0008270 | |
| Arst2g00626 | 297 | SUPERFAMILY | RING/U-box | 164 | 231 | - | - | |
| Arst2g00626 | 297 | SUPERFAMILY | RING/U-box | 239 | 296 | - | - | |
| Arst2g00626 | 297 | SMART | ibrneu5 | 238 | 296 | IPR002867 | GO:0008270 | |
| Arst2g00626 | 297 | SMART | ibrneu5 | 164 | 228 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst2g00626 | Arst-Chr2 | 6354886 | 6356586 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst2g00626 | 96 | 295 | C3H Transcription Factor Family | AT2G31770 | 28.502 | 1.43e-20 | 89.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst2g00626 | K11975 | - | qsa:O6P43_018461 | 378.252 |