Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00552 ATGGCTAGAAGTGCCACAATTCCATTTCCAATACTTGATTTCATTCCTGTTGGATTCAGGTTCAAGCCAACAGATGAAGAGCTTGTGAGCTATTACCTCAATCACAAGCTCCTAAATGACAATTTTCCAATCAATATTATCCCTGACATTGATCTTTGCAAGGTTGAACCTTGGCAAATTCCAGCATTATCAAAGATAAAATCGGATGATCCAGAATGGTTCTTCTTTAGTGGACGTGATTACAAGTATGGAAAGAGCAAAAGATCAAACAGGGCAACCAAAGGAGGATATTGGAAAGCCACAGGACAAGATAGATACATAAAGGAAAGAGGAACTACCAATGTAATTGGGAGCAAGAAGACACTGGTTTTCTATAGTGGCCGTGTTCCTAATGGTGTCAAAACCAATTGGGTTATCCATGAGTATCATGCTACTACCTTTGATGATAGCCAGAGGAATTTTGTTTTGTGTCGCTTGATGAAGAAAGCCGAGAGAAAATCCGAAGATGGAACTGATGCACAAGCTTGTGATGAGGGGGAACCTAGCACTCATATGGAAGAAGCAGATGAGAGTGTCCCAAGTATGTTTGAGTCGCCAGATGTGGACATGGGTTCGATCTTCCACACACTGCCTCAAGACGGATCATCATCACAGCACTCTCCAGTCAGCATTGAACAGCAAGAATCCTTCCCATTCTCCCCATCTGAAAATTATTACCTTGTAAATGAAGATAGAAGTATGCATATACAATTCGAAACAAACGAAGAGAAGCAAGATGCTGAGAAATTTGCGGATTCGATTTTGGATGGTGGAAATATAGCTATGTTTGAAGAAAGACAGCAGCATCATACTTTCATGAATAATCACCTCCGCTCAGTCCCATCAATGAGGGTATGCTATGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTAGACGGGCTGGTTCAAGAGAATACCATGTATCAAAAATGGTTCAATCATCACATGGTGCTGCGTGCACAGATAAAACTAGAAGTATCTCTTCAGAAGACTTTTGGGGATTGGATTCATCTTCATGTGACTCAAATGCAGATAAACCTTTTGAGATCAATTCTATTGAAATTTCTAGTCCTCCATCGGCTCTAAGTAGATCGAAAAATCAATATATTCCGAGGCTATCTCAAACACATAGGAAGGTTTCAAGCAATGCAATTCCCCATCTTGAGGATAAGAAGAAATTGACCACTGTGGAACAATCAAGAAGAGATCAAGAAAAAGCTCAAAAAACTAGTCCAGGAAAGAAGCTAGAAACCAGAAGCTCTGATGTTAATAGAATTGGTAGTTTCATCCACCTAGAGCCGTGTTCATCGAGCGAAAGCCTGACTCCACGAGCGGTATACCTTGTTAATGTAGTTATTGGGATTTTGTTGCTTCTAGCCATTAGTTGGGATGTGCTATCTTGTTAG 1446 0.4059 MARSATIPFPILDFIPVGFRFKPTDEELVSYYLNHKLLNDNFPINIIPDIDLCKVEPWQIPALSKIKSDDPEWFFFSGRDYKYGKSKRSNRATKGGYWKATGQDRYIKERGTTNVIGSKKTLVFYSGRVPNGVKTNWVIHEYHATTFDDSQRNFVLCRLMKKAERKSEDGTDAQACDEGEPSTHMEEADESVPSMFESPDVDMGSIFHTLPQDGSSSQHSPVSIEQQESFPFSPSENYYLVNEDRSMHIQFETNEEKQDAEKFADSILDGGNIAMFEERQQHHTFMNNHLRSVPSMRVCYESSDTDAEVVSRRAGSREYHVSKMVQSSHGAACTDKTRSISSEDFWGLDSSSCDSNADKPFEINSIEISSPPSALSRSKNQYIPRLSQTHRKVSSNAIPHLEDKKKLTTVEQSRRDQEKAQKTSPGKKLETRSSDVNRIGSFIHLEPCSSSESLTPRAVYLVNVVIGILLLLAISWDVLSC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00552 481 MobiDBLite consensus disorder prediction 391 432 - -
Arst2g00552 481 SUPERFAMILY NAC domain 14 162 IPR036093 GO:0003677|GO:0006355
Arst2g00552 481 MobiDBLite consensus disorder prediction 167 186 - -
Arst2g00552 481 Gene3D NAC domain 24 167 IPR036093 GO:0003677|GO:0006355
Arst2g00552 481 ProSiteProfiles NAC domain profile. 15 162 IPR003441 GO:0003677|GO:0006355
Arst2g00552 481 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Arst2g00552 481 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 262 - -
Arst2g00552 481 MobiDBLite consensus disorder prediction 396 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00552 Arst-Chr2 5639953 5643661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00552 12 162 NAC Transcription Factor Family AT4G35580 57.051 6.95e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst2g00552 NAM 7.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00552 - - adu:107473112 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst2g00552 2 5639953 5643661 Arst2g00552 2 5639953 5643661 ECH