Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00550 ATGGAGTTGATGCAAGAATCCAACAAAGGCTACTCTCAAGATTTGGAAGAAGAAGAGGAGGAGGAAGAAGCACCGGGAGAAGAAACCACCACCGCCGCCGGGTTACACCATCATCAACATCAAGATGCAACAACATCAAATTACTTCAACCACACAACAAGAATGAATCAAAATCAACCGCAACCGCAACCGCAACAGTTAGTAGACTTTATGGACTTGTCACTTGGGACAAACATCAACCACCATGAAGGCATCAACAATTTCCAAGGATACTCCTCTTCCTCCGCCGCCGCCACCACCACCACCACAAATAATACAAATCTACAACCTCCGCTGCCTGCTCCGGCGGAGAAAGAGCACATGTTCGACAAAGTAGTGACGCCGAGCGACGTAGGGAAGCTGAACAGGCTGGTAATTCCCAAACAGCATGCGGAGAAGTACTTCCCGCTCGACTCGACGTCGAACGAGAAGGGACTTCTCCTGAATTTCGAAGACCGGAACGGGAAATTGTGGCGGTTCAGATACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACGAAAGGATGGAGCAGATTTGTGAAGGAGAAGAAACTTGATGCAGGTGACATTGTTTCTTTCCAACGCGGAGTTGGAGAAAATTATAGACATAGATTATACATAGATTGGAGAAGAAGACCTGATAATCATCACCATCACCATCACAACCTCCATGGAGGACTTGATTTTCCCTCTTCGTCTTCCAATTTCATCACGCCCTTCTTCATTCCCAGTCAAGCGTCTTCACATTACTCTACGATTCGATACGGTGGCAGATTTTACTCTCTGCCACCACCGCAATCGCAACCACAGCCACAGCCACAGCCACAACCGCAAATGATGATGTCACCAAGACATCATCATTATTATCCAATTCATCATGGTGGATATGGCGGCTATAATCATCCTCACAGTAATGAGTTGTTTTATCTGAGATCAACAACATCAACAACACTACCTTCTCCTCCTCCTCCTCCTTCTTCTTCTTCAATGTCAATGGTTGATCATCATCATTACCATCAAGGATTATTGGCAAGACAACAACAAGAACAAGAACAAGAAAGGGGGTCACCAATGATCATAGATTCAGTACCAATTGCTCATCATTTTCATCATCATGGGGGTGGTGGTGGTAATGGTAATAATGGTAGTAATAGTAATAGTAACAATAATAGTAACAATAATAATTCTGCAGGAAAAAGGTTAAGGCTATTTGGTGTGAACATGGAATGTGCTTCTTCTTCTTCAACAACAACACAAGAAGATCATCAAGAACAAGAACAAGAAGATCCAAAATGCTTCACCTTGTTCTCTTCTACTAACTCAAGGGATG 1372 0.4388 MELMQESNKGYSQDLEEEEEEEEAPGEETTTAAGLHHHQHQDATTSNYFNHTTRMNQNQPQPQPQQLVDFMDLSLGTNINHHEGINNFQGYSSSSAAATTTTTNNTNLQPPLPAPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGENYRHRLYIDWRRRPDNHHHHHHNLHGGLDFPSSSSNFITPFFIPSQASSHYSTIRYGGRFYSLPPPQSQPQPQPQPQPQMMMSPRHHHYYPIHHGGYGGYNHPHSNELFYLRSTTSTTLPSPPPPPSSSSMSMVDHHHYHQGLLARQQQEQEQERGSPMIIDSVPIAHHFHHHGGGGGNGNNGSNSNSNNNSNNNNSAGKRLRLFGVNMECASSSSTTTQEDHQEQEQEDPKCFTLFSSTNSRDAEESGGEDQRRRIREQAANFFDLDPSLQFRQH 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00550 489 MobiDBLite consensus disorder prediction 1 42 - -
Arst2g00550 489 MobiDBLite consensus disorder prediction 13 27 - -
Arst2g00550 489 MobiDBLite consensus disorder prediction 391 412 - -
Arst2g00550 489 Coils Coil 1 21 - -
Arst2g00550 489 MobiDBLite consensus disorder prediction 273 301 - -
Arst2g00550 489 MobiDBLite consensus disorder prediction 278 292 - -
Arst2g00550 489 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 18 433 IPR044800 GO:0003700
Arst2g00550 489 Pfam B3 DNA binding domain 122 226 IPR003340 GO:0003677
Arst2g00550 489 Gene3D - 116 237 IPR015300 -
Arst2g00550 489 CDD B3_DNA 120 221 IPR003340 GO:0003677
Arst2g00550 489 ProSiteProfiles B3 DNA-binding domain profile. 122 225 IPR003340 GO:0003677
Arst2g00550 489 MobiDBLite consensus disorder prediction 327 347 - -
Arst2g00550 489 SMART B3_2 122 227 IPR003340 GO:0003677
Arst2g00550 489 MobiDBLite consensus disorder prediction 381 412 - -
Arst2g00550 489 FunFam B3 domain-containing protein 115 236 - -
Arst2g00550 489 MobiDBLite consensus disorder prediction 425 470 - -
Arst2g00550 489 SUPERFAMILY DNA-binding pseudobarrel domain 118 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00550 Arst-Chr2 5538463 5540723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00550 116 430 RAV Transcription Factor Family AT2G46870 44.688 1.81e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst2g00550 B3 2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00550 K09287 - gmx:100778733 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst2g00550 2 5538463 5540723 Arst2g00550 2 5538463 5540723 ECH