Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00474 ATGTCGGAAGGTGCTGAAATCGATGAGCGTGTGGACTTTGATGATGAGAATTACATGGAAGAGATGGATGATGATGATGTCGAGGAACAATCAGATGGCGATGATGAGGATGATGATGATGATGGGGATGGCGATGATAATAATAACGATAATGCGAACGATAATGATGACGATGACGACGATGATGACGATGATGGAGTGGATGGACAAGGTGAGGAAAATGCTGAAGAACAGGAATATGAAGACTCGGGGGAGGAGGCTGGTGGGAAAGACCAAATGGCCAAAGGGGATAGAACTGGCATTACCACTGGGTCCGAAGGAGATGGGCTGAAACCACCCTTCATCGACGAAGAAGAGAAACAGAAGCATGATGAACTTCTTGCAATGCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGACTTCCTCGGGATGTTTGCGAGGATGATTTGAGGGAATTGTGCGAATCGTTGGGTGAAATTTTTGAGGTGCGATTGATGAAAGACAGGGACAGTGGAGAAGGTAAGGGGTATGCTTTTGTGGCTTTCAAAACAAAAGAGGTTGCACAAAATGCCATAGAAGAGATACACAATAAGAAATATAAGGGTAAAACTTTGAGGTGTTCACTATCTGAGACAAAACAAAGATTGTTCATTGGTAATGTTCCGAAAACTTGGACTGAGGAGGAGTTTAGGAGAGTAGTCGAGGGTGTTGGTCCTGGAGTTGAAGTCATTGAGCTCTTTAAGGACGTTCAAAATCCTAGCAGGAACCGTGGGTTTGCGTTCGTGTCGTATTACAATAATGCATGCGCAGATTATTCAAGGCAGAAAATGTCAACTGCAGGTTTTAAGCTGGAAGGTAATACCCCAACTGTCACATGGGCGGATCCAAAGAATTCAACTGATCATTCAGCTGCTTCCCAGGTTAAAGCTCTTTATGTGAAGAACATACCTGAAAATACTACTACCGAACAACTCAAGGAACTGTTTTCTCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTAGCAAGGCCGGAGGGAAGCGTGATTTTGGTTTCATCCATTATGCAGAGAGGTCAAGTGCATTAAAGGCCGTAAAAGACTCAGAGAAATACGAAGTTGATGGCCAATTGCTCGAGGTTGTTCTTGCCAAACCTCAAGCTGAGAAAAAACCCGATATGGGTTACGGCTATAATCCTGGACTTGCACATCCTGGGTTTGGTGGTGCCTTTGCTGGAAATCCGTATGGCTCGGCAATAGGTGCTGCAGGAGCTGGATATGGTGTTGCTCCTAGCTTTCAACAGCCGCAGCAACCAGTGATATATGGTAGGGGTCCAATGCCGGCTGGAATGCAGATGGTTCCGATGGTATTGCCAGATGGTAGAATCGGCTATGTCTTTCAACAGCCTGGTGTACAGATGCCAGCACCTCGTCCACGCGGGCCTGGTAGGGGCAACAGTTCAGGGGGTCCTGCAGGAAGAGGGGGAGGCAGCGGCAATGAGGGCAGCGGTAAACGCGGTCGGAGGTATCAACCGTACTAG 1542 0.4682 MSEGAEIDERVDFDDENYMEEMDDDDVEEQSDGDDEDDDDDGDGDDNNNDNANDNDDDDDDDDDDGVDGQGEENAEEQEYEDSGEEAGGKDQMAKGDRTGITTGSEGDGLKPPFIDEEEKQKHDELLAMPPHGSEVFIGGLPRDVCEDDLRELCESLGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGVGPGVEVIELFKDVQNPSRNRGFAFVSYYNNACADYSRQKMSTAGFKLEGNTPTVTWADPKNSTDHSAASQVKALYVKNIPENTTTEQLKELFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKAVKDSEKYEVDGQLLEVVLAKPQAEKKPDMGYGYNPGLAHPGFGGAFAGNPYGSAIGAAGAGYGVAPSFQQPQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVFQQPGVQMPAPRPRGPGRGNSSGGPAGRGGGSGNEGSGKRGRRYQPY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00474 513 Gene3D - 215 295 IPR012677 -
Arst2g00474 513 SUPERFAMILY RNA-binding domain, RBD 305 405 IPR035979 GO:0003676
Arst2g00474 513 CDD RRM_SF 136 208 - -
Arst2g00474 513 SMART rrm1_1 135 208 IPR000504 GO:0003723
Arst2g00474 513 SMART rrm1_1 310 382 IPR000504 GO:0003723
Arst2g00474 513 SMART rrm1_1 215 292 IPR000504 GO:0003723
Arst2g00474 513 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 46 214 - -
Arst2g00474 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Arst2g00474 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 378 IPR000504 GO:0003723
Arst2g00474 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 206 IPR000504 GO:0003723
Arst2g00474 513 SMART rrm2_1 135 208 IPR003954 GO:0003676
Arst2g00474 513 SMART rrm2_1 310 382 IPR003954 GO:0003676
Arst2g00474 513 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 486 - -
Arst2g00474 513 MobiDBLite consensus disorder prediction 8 84 - -
Arst2g00474 513 MobiDBLite consensus disorder prediction 471 513 - -
Arst2g00474 513 MobiDBLite consensus disorder prediction 1 114 - -
Arst2g00474 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 296 IPR000504 GO:0003723
Arst2g00474 513 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 215 295 - -
Arst2g00474 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Arst2g00474 513 Gene3D - 296 419 IPR012677 -
Arst2g00474 513 Gene3D - 115 214 IPR012677 -
Arst2g00474 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Arst2g00474 513 SUPERFAMILY RNA-binding domain, RBD 131 299 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00474 Arst-Chr2 4777585 4782108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00474 136 443 Eukaryotic Initiation Factors Gene Family AT1G71770 25.714 3.58e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00474 K13161 - gmx:100800974 649.047