Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00459 ATGGAATATGCAACATATTCATCAGCAGCAGAAGTTTGTGAAGGTATTGAAACTCCACCAGCACCAGCAGCATCATCTTCATCAATTTCATCCATGATGATTTGTAGGAAGAAGAAGAACAACAACAGCAACAATACAAGGAGGTTCAGTGATGATCAAATCAAGTCATTGGAATCAATATTTGAGACTGAGTCAAGGCTTGAGCCAAAGAAGAAGCTTCAACTTGCAAGGGAGCTTGGTTTGCAGCCAAGACAAGTTGCTATTTGGTTTCAGAACAAGAGAGCAAGGTGGAAGTCAAAGCAACTTGAGAGAGATTACACCATTCTCAGAAACAATTACAACAATTTGGCTTCAAGGTTTGAGTCACTCAAGAAGGAGAAACAAGCATTACTAATTCAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCATCAATGGAGAAGAAAACTCAGAGCATGGACAGTGAATCAGAAAATGGTGACACAACCAAGAGTGGTAGTGAACTTAAGGTCAAACCAATAAGCCAATCATCAATGGCAGCAAGATCATCAGAACATGCAGTTCTTTGTGGTGGTGGTGGTGGTGGTGCTCTTTCAGATGATGATACAAGCATCAAAGTTGAGTACTTTGGAAACTTGGAAGATGGGCTTGTGAATTTTGCTCATGATCATGGTGATGGGTCTTTGACATCACCAGAAGATTGGGGTCATTTTGATTCTGATGATCTTTTAGGCCAATCAACCAGTGATTACCAATGGTGGGACTTTTGGTCCTGA 777 0.408 MEYATYSSAAEVCEGIETPPAPAASSSSISSMMICRKKKNNNSNNTRRFSDDQIKSLESIFETESRLEPKKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYTILRNNYNNLASRFESLKKEKQALLIQLQKLNDLIQKPSMEKKTQSMDSESENGDTTKSGSELKVKPISQSSMAARSSEHAVLCGGGGGGALSDDDTSIKVEYFGNLEDGLVNFAHDHGDGSLTSPEDWGHFDSDDLLGQSTSDYQWWDFWS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00459 258 Pfam Homeobox associated leucine zipper 100 141 IPR003106 GO:0006355|GO:0043565
Arst2g00459 258 Pfam Homeodomain 47 98 IPR001356 GO:0003677
Arst2g00459 258 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Arst2g00459 258 PRINTS Lambda-repressor HTH signature 71 80 IPR000047 GO:0003677
Arst2g00459 258 PRINTS Lambda-repressor HTH signature 80 96 IPR000047 GO:0003677
Arst2g00459 258 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
Arst2g00459 258 MobiDBLite consensus disorder prediction 149 165 - -
Arst2g00459 258 SUPERFAMILY Homeodomain-like 22 102 IPR009057 -
Arst2g00459 258 FunFam Homeobox-leucine zipper protein ATHB-7 26 100 - -
Arst2g00459 258 CDD homeodomain 47 101 IPR001356 GO:0003677
Arst2g00459 258 Gene3D - 26 105 - -
Arst2g00459 258 Coils Coil 92 140 - -
Arst2g00459 258 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 37 178 IPR045224 GO:0003700
Arst2g00459 258 SMART HOX_1 43 104 IPR001356 GO:0003677
Arst2g00459 258 MobiDBLite consensus disorder prediction 143 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00459 Arst-Chr2 4412107 4413859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00459 12 258 Homeobox Transcription Factor Family AT2G46680 49.438 1.06e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst2g00459 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00459 K09338 - gmx:100811208 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst2g00459 2 4412107 4413859 Arst2g00459 2 4412107 4413859 ECH