Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00439 ATGAGGCCTGTTTTTGCTGGGAATTTGGAGTATGATACACGACAATCGGAGCTGGAGCGATTGTTCTCAAAGTATGGAAGAATTGACCGCGTTGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATTTTCCATTTGGCTATGAAAAGCAAAGGCTCTCTGTTGAATGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGCTCAAGGGCAAACCAGAAGCCGACAAAAACCCTATTTGTGATCAACTTTGACCCAATTCGTACTAGAGTTCAGGATATAGAAAAGCACTTTGAACCTTATGGGAAGGTTCTTCATGTTCGAATTCGTAGGAACTTTGCGTTTGTGCAGTTTGAAACACAAGAAGATGCTACGAAAGCTCTTGAGTGTACGAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATGCACTGAGGGATGATGGTGATAGGGGTGACAATTATGACAGTCCGAGACAAGGTGGTTATGACCGATCACCGAGTCTGGCCTATCACAGGCGGCCAAGTCCTGAATACGGTCATCCACGCATCCCTGTGTATGATAGATATAATGGACCAGACAGGCGCAGGAGTCCCGATTACGGCAGGCAGAGGAACCCAGATTATGGCAGATACCGCAGCCGTTCACCAGCTCGAAGGTCAAGGAACTAG 720 0.4681 MRPVFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNFPFGYEKQRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRVQDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGDRGDNYDSPRQGGYDRSPSLAYHRRPSPEYGHPRIPVYDRYNGPDRRRSPDYGRQRNPDYGRYRSRSPARRSRN 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00439 239 SMART rrm1_1 92 158 IPR000504 GO:0003723
Arst2g00439 239 SMART rrm1_1 3 70 IPR000504 GO:0003723
Arst2g00439 239 MobiDBLite consensus disorder prediction 163 239 - -
Arst2g00439 239 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Arst2g00439 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Arst2g00439 239 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 233 - -
Arst2g00439 239 SUPERFAMILY RNA-binding domain, RBD 2 165 IPR035979 GO:0003676
Arst2g00439 239 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Arst2g00439 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Arst2g00439 239 MobiDBLite consensus disorder prediction 204 231 - -
Arst2g00439 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Arst2g00439 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Arst2g00439 239 Gene3D - 82 173 IPR012677 -
Arst2g00439 239 Gene3D - 1 81 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00439 Arst-Chr2 4143955 4178403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00439 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 4.36e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00439 K12893 - gmx:100797709 419.083