Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00170 ATGGCTCTGGTGTGTGGTTCCGCGTCGGTGACGTTCCCTTCATCTTCTTTCCCACGTCACAGCCACAGGAATACCTCTTCCTCATTGGTTGGGTTACAATTTCCATTGCACAAGCTGGTATCCTTATCATTATCTCCCTCTTCTTCTTCTTCCAACACCAATGCAAGGATCCTCCGTATCCATTCTCAGCAGCAAGATTCTTCCCTCGTTCCTCCAGAACAAGATCCACGCTTCCTCTGCGTCGAACCCGAACCCCGATTCAAAGGCCCGGACATTTGGAACAAGACCTGGTATCCAAAAGCTGCCGATCATGTTAATACGGAGAAAACATGGTATGTTGTTGATGCTACAGACAAAGTTCTTGGCAGACTGGCATCAACGATTGCTATTCATATCCGAGGGAAAAATCTAGAAACCTATACTCCCAGCGTGGACATGGGTGCATTTGTAATTGTGGTGAATGCTGAAAAGGTTGCTGTATCTGGGAGAAAGAGAACCCAAAAGCTTTACAGGAGGCACTCTGGTAGACCTGGTGGTATGAAAGTAGAGACATTTGCTCAACTGCAGAACAGAATTCCTGAAAGAATTATCGAACATGCTGTTCGTGGCATGCTTCCGAAGGGGAGGCTTGGGAGGAGGCTATTCACCCACCTGAAGGTTTATGAGGGCCCAGATCATCCTCATGCTGCACAGAAGCCCATCGAACTGCCAATTCAGGATAAGAGAATATATTTACAGAGATAA 744 0.4691 MALVCGSASVTFPSSSFPRHSHRNTSSSLVGLQFPLHKLVSLSLSPSSSSSNTNARILRIHSQQQDSSLVPPEQDPRFLCVEPEPRFKGPDIWNKTWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMKVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYEGPDHPHAAQKPIELPIQDKRIYLQR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00170 247 ProSitePatterns Ribosomal protein L13 signature. 201 223 IPR023563 GO:0003735|GO:0005840|GO:0006412
Arst2g00170 247 CDD Ribosomal_L13 111 224 IPR005822 GO:0003735|GO:0005840|GO:0006412
Arst2g00170 247 FunFam 50S ribosomal protein L13 94 238 - -
Arst2g00170 247 SUPERFAMILY Ribosomal protein L13 105 238 IPR036899 GO:0003735|GO:0005840|GO:0006412
Arst2g00170 247 NCBIfam 50S ribosomal protein L13 105 236 IPR005823 GO:0003735|GO:0005840|GO:0006412
Arst2g00170 247 Pfam Ribosomal protein L13 109 227 IPR005822 GO:0003735|GO:0005840|GO:0006412
Arst2g00170 247 Hamap 50S ribosomal protein L13 [rplM]. 111 237 IPR005822 GO:0003735|GO:0005840|GO:0006412
Arst2g00170 247 PANTHER RIBOSOMAL PROTEIN L13 97 242 IPR005822 GO:0003735|GO:0005840|GO:0006412
Arst2g00170 247 Gene3D Ribosomal protein L13 100 243 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00170 113 246 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.915 5.77e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00170 K02871 - gmx:100305981 367.466