Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00113 ATGAGAGATCGAGAGCAAGAGAGGTGGGAAAACACAGGGGGGAGTGCAAAATCACATAAACATGATAAAGATCCCAGGATTTGGAACAAAGAAGAGTATCAACGGTTGGAGCTTGAGTCTTTCTCTGTCTTCGTCGACAATTTGCCAGCAGATATATCAGAAAGAGAGCTTTTTAATATGTTCAAATGGATTGGCAGAATCATCGACATATATCTGTCGCGGAAGAACAAGAATGGCCATGTCTATCTGTTTGCATTTGTGCGATACACTACAAAAGGAGGAGCTCTGAAAGCCGCTGCAGAGATGAATAGTATAGTACTGAGAGGCAGAAAACTGTTTGTTGGAGAAGCGAAGTATAGAAGGAGAGCGGTGGTTCAGAGTACAAGGGGCAAAGAAGTGAAGGGCAGTGCCAGAGAAAGTGATAGAGGAAACAACCCATGA 441 0.4354 MRDREQERWENTGGSAKSHKHDKDPRIWNKEEYQRLELESFSVFVDNLPADISERELFNMFKWIGRIIDIYLSRKNKNGHVYLFAFVRYTTKGGALKAAAEMNSIVLRGRKLFVGEAKYRRRAVVQSTRGKEVKGSARESDRGNNP 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00113 146 CDD RRM_SF 43 114 - -
Arst2g00113 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 112 IPR000504 GO:0003723
Arst2g00113 146 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 22 112 - -
Arst2g00113 146 Gene3D - 3 146 IPR012677 -
Arst2g00113 146 SUPERFAMILY RNA-binding domain, RBD 32 141 IPR035979 GO:0003676
Arst2g00113 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Arst2g00113 146 SMART rrm1_1 42 115 IPR000504 GO:0003723
Arst2g00113 146 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00113 Arst-Chr2 1009811 1010251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00113 42 120 Eukaryotic Initiation Factors Gene Family AT1G22760 32.911 9.09e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00113 K12891 - adu:107484100 194.512