Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00015 ATGGCAAGTGGGTTTGGGGAATCAACGAGCAAGTCTCCCCCAAGCCCTTCGTACTCGAACAACAGCAATAACAACAATGATGCTGGCAACTTTGAATGCAACATATGCTTTGATTTAGCACAAGACCCAATTATCACTTTGTGTGGCCACCTCTTCTGCTGGCCATGTCTCTACAAGTGGCTGCACCTCCACTCGCAATCGCAAGAATGCCCCGTCTGCAAGGCCGCCATTGAGGAGGAGAAGCTGGTTCCATTGTATGGGAGAGGGAAGACATCAACTGACCCGAGATCAAAAACTATTCCGGGTCTTAATATCCCTCATCGTCCTACCGGTCAGAGACCTGAAACTGCAGCTCCTCCTCCCGAAGCAAACCATTTTCATCAACATGGATTTGGTCTAATGGGTGGCTTGGGAGGCTTTGCACCAATGGCAACTGCAAGATTTGGGAATTTCACCTTGTCTGCGGCATTTGGTGGTTTTATACCATCCCTGTTCAACTTTCAATTGCACGGATATCATAATGGGTCCATGTATGGTGGAGCAGCTGGTTATCCTTATGGATACTCTAATTCATTTCACGGTGTCCATGCTCATAGATATCCTCTGCATGCTGGTCAAGGGCAACAAGATTATTACCTGAAGAGGCTCCTTCTGTTTGTCGTCTTCTTTGTTGTCCTTGCTTTTATCTGGCAATAG 696 0.4713 MASGFGESTSKSPPSPSYSNNSNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHLHSQSQECPVCKAAIEEEKLVPLYGRGKTSTDPRSKTIPGLNIPHRPTGQRPETAAPPPEANHFHQHGFGLMGGLGGFAPMATARFGNFTLSAAFGGFIPSLFNFQLHGYHNGSMYGGAAGYPYGYSNSFHGVHAHRYPLHAGQGQQDYYLKRLLLFVVFFVVLAFIWQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00015 231 SMART ring_2 33 73 IPR001841 -
Arst2g00015 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Arst2g00015 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 87 IPR013083 -
Arst2g00015 231 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Arst2g00015 231 MobiDBLite consensus disorder prediction 87 122 - -
Arst2g00015 231 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 87 - -
Arst2g00015 231 MobiDBLite consensus disorder prediction 1 23 - -
Arst2g00015 231 Pfam Zinc finger, C3HC4 type (RING finger) 31 78 - -
Arst2g00015 231 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Arst2g00015 231 SUPERFAMILY RING/U-box 30 86 - -
Arst2g00015 231 CDD RING-HC_AtRMA-like 31 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00015 Arst-Chr2 164049 165634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00015 31 214 C3H Transcription Factor Family AT1G19310 67.196 7.42e-88 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00015 K10666 - gmx:100794086 348.977