Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235216g00063 ATGATCATGATCTCGTTAAGAAAGTGTGATCCACAAACTTCGCGCGCCAAGACCCTCACTGCCAAGTGGAAGCTTTGCCCCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGCGGGCATGTTGCAGCGAAATTCCAATATGACCAGGCTATGTTTCATGGCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGTGGTAAAAGCCAAAATCAAGTCTGCTAAATCAAAAGATGAGTCTGAATCTGTTAAATTTACTCAAAAGAATCTGATTAACAAGATATATACTAATTCTGCAGATGCCAAGATTCCTGCTACTCTTGAGTATCTCGGAACTTTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGAGTTGCATCTGGATTGATGGAGGTACACCTGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTAGTATGGTGGTATTTTTGGTTGTGCATTTCTTCCATGTGTTTCCGTTATAAGCATCTTTTCTGTTGTCTTGGTGGAAGCTTTGCCCCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGCCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGGTCTCATCAGTAAATATATACTAG 1395 0.4115 MIMISLRKCDPQTSRAKTLTAKWKLCPKGKNEPSKELPKFSVKLFLHSSGHVAAKFQYDQAMFHGRLWMFPLSSLSEAEKVLGEISNYKVQLEVVKAKIKSAKSKDESESVKFTQKNLINKIYTNSADAKIPATLEYLGTFIEAGCKFLIFAHHQPMIDAIHECLLKKKVSCIWIDGGTPAASRQQLVEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQKKKVGCIWIDGGTPAASRQQLVEKDYIKAAVVWWYFWLCISSMCFRYKHLFCCLGGSFAPREKMSLLKNCRSFLSNFFFIPVAMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQVSSVNIY 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235216g00063 464 Coils Coil 85 105 - -
Arst26235216g00063 464 CDD SF2_C_SNF 128 243 - -
Arst26235216g00063 464 CDD SF2_C_SNF 346 464 - -
Arst26235216g00063 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 246 IPR027417 -
Arst26235216g00063 464 SMART helicmild6 373 456 IPR001650 -
Arst26235216g00063 464 SMART helicmild6 159 238 IPR001650 -
Arst26235216g00063 464 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 464 IPR001650 -
Arst26235216g00063 464 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 134 290 IPR001650 -
Arst26235216g00063 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 464 IPR027417 -
Arst26235216g00063 464 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 92 243 - -
Arst26235216g00063 464 Gene3D - 301 464 IPR027417 -
Arst26235216g00063 464 Gene3D - 72 248 IPR027417 -
Arst26235216g00063 464 Pfam Helicase conserved C-terminal domain 356 456 IPR001650 -
Arst26235216g00063 464 Pfam Helicase conserved C-terminal domain 134 238 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235216g00063 361 463 RAD5 or RAD16-like Gene Family AT1G05120 33.981 1.54e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235216g00063 K14440 - adu:107462208 912.138