Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235216g00062 ATGATCATGATCTCGTTAAGAAAGTGTGATCCACAAACTTCGCGCGCCAAGACCCTCACTGCCAAGTGGAAGCTTTGCCCCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGCGGGCATGTTGCAGCGAAATTCCAATATGACCAGGCTATGTTTCATGGCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGTGGTAAAAGCCAAAATCAAGTCTGCTAAATCAAAAGATGAGTCTGAATCTGTTAAATTTACTCAAAAGAATCTGATTAACAAGATATATACTAATTCTGCAGATGCCAAGATTCCTGCTACTCTTGAGTATCTCGGAACTTTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGAGTTGCATCTGGATTGATGGAGGTACACCTGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTAGTATGGTGGTATTTTTGGTTGTGCATTTCTTCCATGTGTTTCCGTTATAAGCATCTTTTCTGTTGTCTTGGTGGAAGCTTTGCCCCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGCCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGGGATGTGGTGCAATTCAAACCGGATAA 1398 0.4142 MIMISLRKCDPQTSRAKTLTAKWKLCPKGKNEPSKELPKFSVKLFLHSSGHVAAKFQYDQAMFHGRLWMFPLSSLSEAEKVLGEISNYKVQLEVVKAKIKSAKSKDESESVKFTQKNLINKIYTNSADAKIPATLEYLGTFIEAGCKFLIFAHHQPMIDAIHECLLKKKVSCIWIDGGTPAASRQQLVEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQKKKVGCIWIDGGTPAASRQQLVEKDYIKAAVVWWYFWLCISSMCFRYKHLFCCLGGSFAPREKMSLLKNCRSFLSNFFFIPVAMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQGCGAIQTG 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235216g00062 465 Coils Coil 85 105 - -
Arst26235216g00062 465 CDD SF2_C_SNF 128 243 - -
Arst26235216g00062 465 Gene3D - 72 248 IPR027417 -
Arst26235216g00062 465 Gene3D - 301 459 IPR027417 -
Arst26235216g00062 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 246 IPR027417 -
Arst26235216g00062 465 SMART helicmild6 373 456 IPR001650 -
Arst26235216g00062 465 SMART helicmild6 159 238 IPR001650 -
Arst26235216g00062 465 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 134 290 IPR001650 -
Arst26235216g00062 465 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 92 243 - -
Arst26235216g00062 465 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 465 IPR001650 -
Arst26235216g00062 465 Pfam Helicase conserved C-terminal domain 356 456 IPR001650 -
Arst26235216g00062 465 Pfam Helicase conserved C-terminal domain 134 238 IPR001650 -
Arst26235216g00062 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 458 IPR027417 -
Arst26235216g00062 465 CDD SF2_C_SNF 346 457 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235216g00062 327 457 RAD5 or RAD16-like Gene Family AT1G05120 31.061 4.11e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235216g00062 K14440 - adu:107462208 910.212