Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235216g00061 ATGTTTCATGGCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGTGGTAAAAGCCAAAATCAAGTCTGCTAAATCAAAAGATGAGTCTGAATCTGTTAAATTTACTCAAAAGAATCTGATTAACAAGATATATACTAATTCTGCAGATGCCAAGATTCCTGCTACTCTTGAGTATCTCGGAACTTTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGAGTTGCATCTGGATTGATGGAGGTACACCTGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTAGTATGGTGGTATTTTTGGTTGTGCATTTCTTCCATGTGTTTCCGTTATAAGCATCTTTTCTGTTGTCTTGGTGGAAGCTTTGCCCCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGCCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCTCATCAGTAAATATATACTAGTTGGGATGTGGTGCAATTCAAACCGGATAATTTGGGGGCAGGTGTTAGATGGCCATGAGAACACCTTAGCTGTGTCAAATAATCAGCCATTGAGTAGCCCTGCAAAGCATACTACTATTGGGCATAGGCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGGTCGGAAGTCGGAACATCAGCCTGA 1416 0.4124 MFHGRLWMFPLSSLSEAEKVLGEISNYKVQLEVVKAKIKSAKSKDESESVKFTQKNLINKIYTNSADAKIPATLEYLGTFIEAGCKFLIFAHHQPMIDAIHECLLKKKVSCIWIDGGTPAASRQQLVEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQKKKVGCIWIDGGTPAASRQQLVEKDYIKAAVVWWYFWLCISSMCFRYKHLFCCLGGSFAPREKMSLLKNCRSFLSNFFFIPVAMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGLISKYILVGMWCNSNRIIWGQVLDGHENTLAVSNNQPLSSPAKHTTIGHRPSKQRTLDQFVRRCDNVDRSEVGTSA 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235216g00061 471 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 30 182 - -
Arst26235216g00061 471 CDD SF2_C_SNF 285 395 - -
Arst26235216g00061 471 Gene3D - 11 185 IPR027417 -
Arst26235216g00061 471 Gene3D - 240 403 IPR027417 -
Arst26235216g00061 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 406 IPR027417 -
Arst26235216g00061 471 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 73 229 IPR001650 -
Arst26235216g00061 471 SMART helicmild6 98 177 IPR001650 -
Arst26235216g00061 471 SMART helicmild6 312 395 IPR001650 -
Arst26235216g00061 471 MobiDBLite consensus disorder prediction 429 448 - -
Arst26235216g00061 471 CDD SF2_C_SNF 67 182 - -
Arst26235216g00061 471 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 433 IPR001650 -
Arst26235216g00061 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 185 IPR027417 -
Arst26235216g00061 471 Pfam Helicase conserved C-terminal domain 73 177 IPR001650 -
Arst26235216g00061 471 Pfam Helicase conserved C-terminal domain 295 395 IPR001650 -
Arst26235216g00061 471 Coils Coil 24 44 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235216g00061 300 395 RAD5 or RAD16-like Gene Family AT1G05120 35.417 1.86e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235216g00061 K14440 - adu:107462208 942.184