Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235216g00060 ATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGCGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGTGGTAAAAGCCAAAATCAAGTCTGCTAAATCAAAAGATGAGTCTGAATCTGTTAAATTTACTCAAAAGAATCTGATTAACAAGATATATACTAATTCTGCAGATGCCAAGATTCCTGCTACTCTTGAGTATCTCGGAACTTTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGAGTTGCATCTGGATTGATGGAGGTACACCTGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTAGTATGGTGGTATTTTTGGTTGTGCATTTCTTCCATGTGTTTCCGTTATAAGCATCTTTTCTGTTGTCTTGGTGGAAGCTTTGCCCCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGCCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCTCATCAGTAAATATATACTAGTTGGGATGTGGTGCAATTCAAACCGGATAATTTGGGGGCAGGTGTTAGATGGCCATGAGAACACCTTAGCTGTGTCAAATAATCAGCCATTGAGTAGCCCTGCAAAGCATACTACTATTGGGCATAGGCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGGTCGGAAGTCGGAACATCAGCCTGA 1491 0.4131 MSLLKNCRSFLSNFFFIPAGMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQLEVVKAKIKSAKSKDESESVKFTQKNLINKIYTNSADAKIPATLEYLGTFIEAGCKFLIFAHHQPMIDAIHECLLKKKVSCIWIDGGTPAASRQQLVEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQKKKVGCIWIDGGTPAASRQQLVEKDYIKAAVVWWYFWLCISSMCFRYKHLFCCLGGSFAPREKMSLLKNCRSFLSNFFFIPVAMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGLISKYILVGMWCNSNRIIWGQVLDGHENTLAVSNNQPLSSPAKHTTIGHRPSKQRTLDQFVRRCDNVDRSEVGTSA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235216g00060 496 CDD SF2_C_SNF 92 207 - -
Arst26235216g00060 496 Pfam Helicase conserved C-terminal domain 98 202 IPR001650 -
Arst26235216g00060 496 Pfam Helicase conserved C-terminal domain 320 420 IPR001650 -
Arst26235216g00060 496 SMART helicmild6 123 202 IPR001650 -
Arst26235216g00060 496 SMART helicmild6 337 420 IPR001650 -
Arst26235216g00060 496 Coils Coil 49 69 - -
Arst26235216g00060 496 Gene3D - 35 211 IPR027417 -
Arst26235216g00060 496 Gene3D - 265 428 IPR027417 -
Arst26235216g00060 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 210 IPR027417 -
Arst26235216g00060 496 CDD SF2_C_SNF 310 420 - -
Arst26235216g00060 496 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 55 208 - -
Arst26235216g00060 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 458 IPR001650 -
Arst26235216g00060 496 MobiDBLite consensus disorder prediction 454 473 - -
Arst26235216g00060 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 431 IPR027417 -
Arst26235216g00060 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 98 254 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235216g00060 325 420 RAD5 or RAD16-like Gene Family AT1G05120 35.417 2.68e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235216g00060 K14440 - adu:107462208 932.554