Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235216g00052 ATGATCATGATCTCGTTAAGAAAGTGTGATCCACAAACTTCGCGCGCCAAGACCCTCACTGCCAAGTGGAAGCTTTGCCCCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGCGGGCATGTTGCAGCGAAATTCCAATATGACCAGGCTATGTTTCATGGCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGAGTTGCATCTGGATTGATGGAGGTACACCTGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTGGAAAAGGATTATATCAAGGCAGCTGTAGTATGGTGGTATTTTTGGTTGTGCATTTCTTCCATGTGTTTCCGTTATAAGCATCTTTTCTGTTGTCTTGGTGGAAGCTTTGCCCCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGCCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCTCATCAGTAAATATATACTAGTTGGGATGTGGTGCAATTCAAACCGGATAATTTGGGGGCAGGTGTTAGATGGCCATGAGAACACCTTAGCTGTGTCAAATAATCAGCCATTGAGTAGCCCTGCAAAGCATACTACTATTGGGCATAGGCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGGTCGGAAGTCGGAACATCAGCCTGA 1443 0.4255 MIMISLRKCDPQTSRAKTLTAKWKLCPKGKNEPSKELPKFSVKLFLHSSGHVAAKFQYDQAMFHGRLWMFPLSSLSEAEKVLGEISNYKVQAGCKFLIFAHHQPMIDAIHECLLKKKVSCIWIDGGTPAASRQQLVEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQKKKVGCIWIDGGTPAASRQQLVEKDYIKAAVVWWYFWLCISSMCFRYKHLFCCLGGSFAPREKMSLLKNCRSFLSNFFFIPVAMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGLISKYILVGMWCNSNRIIWGQVLDGHENTLAVSNNQPLSSPAKHTTIGHRPSKQRTLDQFVRRCDNVDRSEVGTSA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235216g00052 480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 442 IPR001650 -
Arst26235216g00052 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 415 IPR027417 -
Arst26235216g00052 480 CDD SF2_C_SNF 80 191 - -
Arst26235216g00052 480 SMART helicmild6 107 186 IPR001650 -
Arst26235216g00052 480 SMART helicmild6 321 404 IPR001650 -
Arst26235216g00052 480 CDD SF2_C_SNF 294 404 - -
Arst26235216g00052 480 Gene3D - 71 195 IPR027417 -
Arst26235216g00052 480 Gene3D - 249 412 IPR027417 -
Arst26235216g00052 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 194 IPR027417 -
Arst26235216g00052 480 Pfam Helicase conserved C-terminal domain 304 404 IPR001650 -
Arst26235216g00052 480 Pfam Helicase conserved C-terminal domain 90 186 IPR001650 -
Arst26235216g00052 480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 77 238 IPR001650 -
Arst26235216g00052 480 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 300 472 - -
Arst26235216g00052 480 MobiDBLite consensus disorder prediction 438 457 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235216g00052 275 404 RAD5 or RAD16-like Gene Family AT1G05120 30.534 2.03e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235216g00052 K14440 - adu:107462208 957.592