Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235216g00017 ATGGCTCTGGCCACCTGCCTCACCTCTATCCTCCTCCAGGATGACCACGATCACCACCTCCGGTACTCCCACCCTGACCACCATCACCTCTACCATAGTGGCCCCGTAACCACCTCCACCACCTCCCTGACCTCCCGTCACCACCGTTGTACCCTCCTCCACCACCACCACTTCCCTGACCCCGTCGTCACCTCCATCATCTCCGTCATCACCACCTTCGTCCTCACCGCTACCCTCATCCTCTCCGCCTCTGCCTCCACGTCGGCCTCTACCTCACCACCACCTCTAGCTCCTCTACGGCCGCGACCCCTCCCCCCTCGCCGTCCAACCATTCCCAACCCTTCCCACCAAACCCCATTTCCGATTCCCGTCCTCAAAAAAGAATCAAAAGACCCTGTGGTTCAGTTTCTGGAAGGAGAACTTCTCATAGTGTGTTTGTATTCCAATCCAGGTGGACGCTTTGCCTCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGCCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTCCCGCTTTCTTCCTTGTCCGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATTTGGATTGATGGAGGTACACCCGCTGCATCAGGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGGATGTGGTGCAATTCAAACCGGATAATTTGGGGGCAGGTGTTAGATGGCCATGAGAACACCTTAGCTGTGTCAAATAATCATCCATTGAGTAGCCCTGCAAAGCATACTACTATTGGGCATAGGCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGGTCGGAAGTCGGAACATCAGCCTGA 1143 0.4943 MALATCLTSILLQDDHDHHLRYSHPDHHHLYHSGPVTTSTTSLTSRHHRCTLLHHHHFPDPVVTSIISVITTFVLTATLILSASASTSASTSPPPLAPLRPRPLPPRRPTIPNPSHQTPFPIPVLKKESKDPVVQFLEGELLIVCLYSNPGGRFASREKMSLLKNCRSFLSNFFFIPVAMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASGQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGMWCNSNRIIWGQVLDGHENTLAVSNNHPLSSPAKHTTIGHRPSKQRTLDQFVRRCDNVDRSEVGTSA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235216g00017 380 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 200 362 IPR001650 -
Arst26235216g00017 380 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 210 314 - -
Arst26235216g00017 380 SMART helicmild6 230 313 IPR001650 -
Arst26235216g00017 380 Gene3D - 156 318 IPR027417 -
Arst26235216g00017 380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 331 IPR027417 -
Arst26235216g00017 380 CDD SF2_C_SNF 203 313 - -
Arst26235216g00017 380 MobiDBLite consensus disorder prediction 94 119 - -
Arst26235216g00017 380 MobiDBLite consensus disorder prediction 86 121 - -
Arst26235216g00017 380 Pfam Helicase conserved C-terminal domain 213 313 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235216g00017 217 322 RAD5 or RAD16-like Gene Family AT1G02670 33.019 5.07e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235216g00017 K14440 - adu:107462208 452.981