Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235140g00007 ATGGCTGCATCGTCTTCCTCAGCATCGCAATCGCATTTCACCTATTCCAACGCCCCTACCTACTTCCCCGTTCCTTTCCACCTCCAGCAATCCGCCGCCACACCGGCGAATTACGCCGCTGCGGTGTACGCTGCGGCTCCGGCAGTACAAATCCCTTCGCTTCCGGTCATCGGCCCTGTCTCTCCGGCTCCGGTTTCTGGCGTGTACTCCTTACCGCAATATCCGTCGCAGCAGTTGTTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCGCTGGAGAGCGTGAAGGCGGCGATTGCGAGCAGCGAGGCGGAGAACAAGGCGCAGGCGAAGAAGAAAGCAGTTCCTCGAAAAGCTGCTGGTCAAACATGGGAGGATCCTATTCTTGCTGAGTGGCCCGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGACGATGTTCTTACCAAAGCATTTTCACGTTTCCCTTCCTTTAGCATGGCACGGCTTTCCTCGTCATTGCTCATCGTCCACAAATCAAAGTACAATTCAAATTTTTTAACGGTTGTCAGAGATAAACGGACTGGGAAAACAAAGGGCTATGGTTTTGTAAGCTTTGCCAGTCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCGATAAAATTAAGCAAGAGTAAGTGGAAGGAGAGAACAGATTTCGAGGCCCTGGAAAAACAGAAGCGCCAAACTCATAAGAAACCGAAGCTTCCCAGGAAGGGTGTTCTTCACAAGTGA 795 0.5044 MAASSSSASQSHFTYSNAPTYFPVPFHLQQSAATPANYAAAVYAAAPAVQIPSLPVIGPVSPAPVSGVYSLPQYPSQQLFERDAQIITPEALESVKAAIASSEAENKAQAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFSMARLSSSLLIVHKSKYNSNFLTVVRDKRTGKTKGYGFVSFASPSDLAAALKEMNGKYVGNRPIKLSKSKWKERTDFEALEKQKRQTHKKPKLPRKGVLHK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235140g00007 264 SUPERFAMILY RNA-binding domain, RBD 124 238 IPR035979 GO:0003676
Arst26235140g00007 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 228 IPR000504 GO:0003723
Arst26235140g00007 264 CDD RRM_RBM42 131 232 IPR034215 -
Arst26235140g00007 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 234 IPR000504 GO:0003723
Arst26235140g00007 264 SMART rrm1_1 138 230 IPR000504 GO:0003723
Arst26235140g00007 264 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 65 168 - -
Arst26235140g00007 264 MobiDBLite consensus disorder prediction 249 264 - -
Arst26235140g00007 264 Gene3D - 85 253 IPR012677 -
Arst26235140g00007 264 MobiDBLite consensus disorder prediction 240 264 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235140g00007 139 248 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 5.07e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235140g00007 K25079 - gmx:100807693 372.859