Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235082g00052 ATGCCCTCTCTTAATTGCTTCAAAGTTTCAGGTGGCATCAAAGCACAAGAATTGGGGAAGCTTATCCCTTATGAGTTGACTGTGAGTCCTGGACAGGATGTGGCGAAGGCGATATGGGAGGCTTGGGGAGCAAGCAATCGGTTTGGTTGCATACTTTTTGCTTCTGGTAGTATAGCAAGAGCCATATTTGGTAGACCAAACTCAAATAGAATTCGTATATATGAGGGGAGCTTTAAGATTCTGTCAATGTCTGGACATCATATGCTGCGAGACGATGGTTCTGAAACTTCGAGTTTGAGCATCACACTGGCTGCTTCTGATGGAACTGCTTTTACTGGTACCCTCATCAACACCTTGACAGCCAATGACACTGTTCAAATTTCATGCTACCAAAACCGATAA 402 0.4403 MPSLNCFKVSGGIKAQELGKLIPYELTVSPGQDVAKAIWEAWGASNRFGCILFASGSIARAIFGRPNSNRIRIYEGSFKILSMSGHHMLRDDGSETSSLSITLAASDGTAFTGTLINTLTANDTVQISCYQNR 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235082g00052 133 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 127 IPR039605 GO:0003680
Arst26235082g00052 133 SUPERFAMILY AF0104/ALDC/Ptd012-like 23 128 - -
Arst26235082g00052 133 CDD DUF296 23 127 IPR005175 -
Arst26235082g00052 133 Gene3D - 24 131 - -
Arst26235082g00052 133 ProSiteProfiles PPC domain profile profile. 18 133 IPR005175 -
Arst26235082g00052 133 Pfam Plants and Prokaryotes Conserved (PCC) domain 24 127 IPR005175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235082g00052 10 127 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 33.333 1.00e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235082g00052 - K07187 ahf:112706866 253.832