Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235082g00023 ATGAGTAGCCAGCAGAGAGTTGTGTCTTCTAGTGAAAACAGGGAAGATCAATCTTCGGAGATCGGTAACCAAATTGAACGTGTTCGGGATGGATTCGTTGTTAATCAGCATGAGGGCCAATCTGAGCATACACGGAGGGGAATCCGTAGATTGCGTGGCCGGCAGGTTCTGCTTGATATGCTCAAGAAGGCTGAGGTGGAAAGGCAAAGAGAAGTTCAGGAGTTGTTTGAACACCGGGCTGTATCCCGTTTCCCCCACCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCAACTGATAATAACAGGTCCACTTCCATTGCGGAAAGTGAATTAGGTTTATTGAGGCAAAAACAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTCCAGAAAGGACAATACTGGTTGCAGTCAAGCAACAAGCAACGTTTCCGATGCCTCATCTGACACTGATGGTGATGTTAATGCAATTGAACATGCTGGAGCCAGCAGTTCACAAACAGTCCCATCTGTACATGCTAAAAAGTCGGAGTCTAATAACGATGGAAGTGATGGAATTGGCATATCTGGCAGGGAAAACTGTTTTCAACAATCTACTTATGAGAATCTAGACTGTCAAGATTCTGGTGCTTATGCTAATGAAATTGATCAGGCATTGGCTTCAAGTGTTGAGGTTGAAGGCAGCGATAGCATTGGACAAAATGTTGTTATGGATACTGAAGATGCTTCTAGTGGCCTCACCCAACAAAGGTTGCAAATTGAAGGTAGAGATAGCAATATGCAGGTAAATGAGGTACATATTGAGCAATCTGAGCTGGGTGGTATAACCGATAATGAAAGCTACTTATCACATCACAGCAATAGTATAGAGGGCAATATTGCTGCTGATGTGGATTGGGATGTATCTGTTGCTCCAGAAGTAGAGCAACCAGAAGAGGCTATTTCTGAAAATGAAGGAAGTGACTGGCATCAAACTAGCATTGAATGGAGTAGCACTGAGGATGGTGTTGACAATAATCAACTCGGTGGCTCATCAAATGAACTACCTCCAAACACATTCGGAAATGAAGATGGAGAAAATTCTCGCCTACAGGAAGGGCCTGAAGTGTGGCAGGAGGACAGCGGCTTTCAAGAGGCTGTAGAAATTTGGTTGGGAGGACCTTCTGATCATGAAGCAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCCGAAGATGACAATGTGTACAGTGTCGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGCCTTGATCAGTTGATACAATCATACGTTGAAAGGCAGAGTCATGCTAACGTTGAGTGGGAGCTGCAAGAAACAACCACCCCTTTCTCTCCCTCGGCAGCACAGGAGCTTGAGCAACAGAACAGGGATCCGATTGTTGGTACTCAGGATGCTGTTAATAGCTCACTTGGTCGTCAACCCTTGCCGCCGCCACCTCCGCCACCGCCGATATGGGATCACCGCCGCTCACGTCATGACAGATGGTCACCTCATGATATAAATAATCAACGCCTAGGAATGGAATGGGATGTCATTAATGACTTGAGAGTTGACATGGTTAGGCTACAGCAAAGAATGAACAATATGCAGAGAATGCTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAGGTTTCTGCGGCCCTAAATCGCTCAACTGGTTCATCAGGAACACGTGACCATGATTCACCAGATGATAAATCCAAATGGGAATGCGTGAGGAAAGGGGTTTGCTGCATTTGCTGCGAAAGCAATATTGATTCTCTCTTGTACAGATGTGGACATATGTGCACATGTTCTAACTGTGCTAATGATTTGCACCGAAGTGGAAGGAAGTGTCCAATGTGTCAAGCACCAGTTGTTGAAGTAATTCGTGCTTATTCCATACTATAG 1989 0.45 MSSQQRVVSSSENREDQSSEIGNQIERVRDGFVVNQHEGQSEHTRRGIRRLRGRQVLLDMLKKAEVERQREVQELFEHRAVSRFPHRNRIQALLRGRFLRNDRSTDNNRSTSIAESELGLLRQKQTVSGLREGFFSRKDNTGCSQATSNVSDASSDTDGDVNAIEHAGASSSQTVPSVHAKKSESNNDGSDGIGISGRENCFQQSTYENLDCQDSGAYANEIDQALASSVEVEGSDSIGQNVVMDTEDASSGLTQQRLQIEGRDSNMQVNEVHIEQSELGGITDNESYLSHHSNSIEGNIAADVDWDVSVAPEVEQPEEAISENEGSDWHQTSIEWSSTEDGVDNNQLGGSSNELPPNTFGNEDGENSRLQEGPEVWQEDSGFQEAVEIWLGGPSDHEAAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQSHANVEWELQETTTPFSPSAAQELEQQNRDPIVGTQDAVNSSLGRQPLPPPPPPPPIWDHRRSRHDRWSPHDINNQRLGMEWDVINDLRVDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSGTRDHDSPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSNCANDLHRSGRKCPMCQAPVVEVIRAYSIL 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235082g00023 662 CDD mRING-HC-C3HC5_NEU1 610 659 - -
Arst26235082g00023 662 MobiDBLite consensus disorder prediction 1 47 - -
Arst26235082g00023 662 MobiDBLite consensus disorder prediction 490 510 - -
Arst26235082g00023 662 MobiDBLite consensus disorder prediction 166 197 - -
Arst26235082g00023 662 SUPERFAMILY RING/U-box 609 655 - -
Arst26235082g00023 662 ProSiteProfiles Zinc finger RING-type profile. 610 649 IPR001841 -
Arst26235082g00023 662 Pfam Zinc finger, C3HC4 type (RING finger) 608 654 - -
Arst26235082g00023 662 MobiDBLite consensus disorder prediction 141 158 - -
Arst26235082g00023 662 MobiDBLite consensus disorder prediction 141 197 - -
Arst26235082g00023 662 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 250 662 - -
Arst26235082g00023 662 Coils Coil 538 565 - -
Arst26235082g00023 662 MobiDBLite consensus disorder prediction 1 18 - -
Arst26235082g00023 662 MobiDBLite consensus disorder prediction 339 366 - -
Arst26235082g00023 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 660 IPR013083 -
Arst26235082g00023 662 MobiDBLite consensus disorder prediction 339 378 - -
Arst26235082g00023 662 MobiDBLite consensus disorder prediction 579 599 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235082g00023 610 656 C3H Transcription Factor Family AT3G06140 38.298 1.01e-06 49.7