Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235082g00022 ATGGCGAAGGGTACGGATTCCAACGAGTTCATGATGCTTTCTAGGGTACGGACGGGTCTCAAGAGGGAATTTGCATTCGCCATGAAGGCCCAATCGGAGATCGGTGGCGGTTCCTTGGGCCGCACCCGTGCCAGCAAGAACCAGAATGTGCCTCCGGCTCAGCCCAGTCCCGCCAGAAAGCGCCAAAGGAAGTCATGTTCCGTGGAGGAAGAGGCGCCGGCGACGAAGAATGAAGTTCAAGAGGAGGTTGATGGGTACACGGCAGATGTGGCGGGTGTGGCGACAGCGAAGATTGATTCGGAGGAGGCTGGCGACGCCGTGAGCGAGGAGGAAGCGAAGAGCGACGTGGTGGATATCAACAGCGACGACGAGCCGAAGAATAATCAGGTTGGGGAATCATTGTTGGAGGAGAAGAAGATAGAGGAGGGAGAGGTTGACGAACCAAAGGGTGATATGGTGCTGGAGACTGTGATCAATGAGGAACCCATCAATGAAGAAGAGCCTCGTGTGGTTGTGGATGAAATTGAGAATAAAGAGGAGCAAGTTTCTCCTGAGGATAAAAGTGCACCTTTGGAAAAACGTGCTTCTGGGGAACACGGTGCAGTTGGGATAACAACACCACTTTTGGTTTGCAGTGACGATGATAAGGGGAAGAGAGTTGTAGCTGTGGAGAAGCCTATGAGGAGGTTTACTAGGTCGGTATTGAAGCAAAAAACTGAGAATACCAATATGGTGAATGATGGGGAAGGTGATGCTATTGTTGTTATAGGTGTTGGAGCTGCTGATGATAATGTTCAGAATGAAACTGAGGTTGTGACTGAAACTGATGCTTCACCACAGTTCACAACTCCAACTCCAGCAAAGGGATCAAGGAGGGGCATGAAGAGGTTCCCTACCAAGCTGAAGGACCTTCTCGCCACCGGGATTCTTGAGGGACTGCAAGTGAAGTATGTCAGGGGATTGAAGGCACGGAGGCCTGGAGAAGCAGGGCTTCAAGGAGTCATTCGTGACTCGGGGGTTTTGTGCTATTGTCCGGATTGTAAAGGGAACAAGGTTGTCACACCCACTGTGTTTGAGCTGCATGCTGGTAGTGCGAACAAACGACCTCCTGAGTATATGTACCTTGAGAATGGGAATACTCTCCGTGACATCATGAATGCATGCTGGAATTTTCCTTTGGACACCATGGAAGAAGCTGTCCAAAAGGTCCTTGGTGGTTTCACTTTGAAGAAGTCTAACATCTGTTTTAATTGCAGAGGTGGCAATGGTTCATCAAGACTACTACTATGTGATTCGTGCATGGAGTTGAAAGACACTCAACCTAGCCATCGTCAAACAAAAAGTGTTGATCAAAATACCGTGACTAGCACTAGAAGTGTTGCCCAAACTCCTATGACTAGCACTAAAAGTGTTGGCCAAACTCCTCTGACTAGCACTAAAAGTGTTGCCCAAACTCCTGTGACTAGCACTAAAATTGTTGCCCAAACTCCTGTGACTGGCAGTAAAACTGTTTCTCAAACCACCATGACTAGCACTACAGTTGTTTCATTTGCAGTTCAACCCAGATCACCAGAACCACAATCAGAACCAGAGCCAGTTGCAGTTCCAAAGTCCTTAAACAATGGAATGAAGCATAGCACATCTCATGGCAGGAGCCAGGGAAGAATTACTAGAAAGTATGAAGACGTGCTGGCAGATGGAACTGAACTAGCGTACTATGCTCATGGAGAGAAAAAGCTGGTAGGTTACAAGAAGGGATATGGAATTTTTTGTACCTGCTGCAAATCTGAGGTCAGTGCCTCTCAGTTTGAAGCCCATGCTGGCTTGGCATCTCGACGCAAGCCTTACTTGCACATATACACACCTGATGGAGTTTCACTCCATGATTTGTCCATCTCTTTATCAAAAGATCGGAGGTTTGCTATCAGTGAAAATGATGACCTCTGCAGCATTTGTGAAGATGGAGGGGATCTTTTGTGCTGTGATGGATGTCCAAGAGCTTTTCACATAGATTGTGTTCCTCTTCCATGCATTCCAACTGGTACTTGGTATTGTAAATATTGTCAGAATCTTTATGGGGAGCATAATGTGAATGCGCAAGCAAAAGACCGAAGATGTGTACGTGTTGTCAAAACTAACAAGGTTGACCATGGTGGATGTGCCTTATGCAGACTCTACTATTTCAGTAAAAGTTTTGGTCCTCGGACAGTAATCATTTGTGATCAGTGTGAAAAAGAATATCACGTTGGGTGCTTGAAGGAACATAACATACAAAACCTTGAGGAATTACCTGAAGGGAATTGGTTTTGTGGTACAAGTTGTGGTCAAATTCATTCTGCTCTTGTGAATTTGGTGGCTAGTGGAGAGAATAGCCTCCCAGATTCCCTTTTAAGTTTGATTAAAAGGAAACATGAAGAGAAAGGTTTAGATGCTGTGGATGGTCTCGATATTAAATGGAGGCTTCTGAACTGGAAGCGTGCTGCTTCTGTTGACACTAGAAAATTGCTTTCAAAGGCTGTTGCCATCTTCCATGAGAGGTTTGATCCTATAGTCGATTCTAGTTCTGGCCGTGATTTTATTCCAACCATGCTATTTGGAAGGAACATCCGGGGTCAAGATTTTGGTGGAATGTACTGTGCGGTGCTTACTGTCAACCAAGTTGTTGTCTCTGCTGGCATATTTCGTGTCTTCGGGCTAGAAGTAGCAGAGCTTCCACTAGTGGCAACAGTAGCAGATTTCCAAGGAAAGGGTTACTTTCAGTGCCTATTTTCTTGCATGGAGAGGCTGCTTGCATCTCTGAATGTGAAACACCTTGTTTTGCCCGCTGCTGAAGAAGCCGAATCAATATGGACAAGTAAATTTGGGTTTACAAAACTGGAACAAGAGGAGATAAACAACTATAAGAAATTTTATCGCATGATGATCTTTCAAGGGACTTCATTACTACATAAGCCGGTTCCTATGCCTGAACAGAACTAA 2979 0.4572 MAKGTDSNEFMMLSRVRTGLKREFAFAMKAQSEIGGGSLGRTRASKNQNVPPAQPSPARKRQRKSCSVEEEAPATKNEVQEEVDGYTADVAGVATAKIDSEEAGDAVSEEEAKSDVVDINSDDEPKNNQVGESLLEEKKIEEGEVDEPKGDMVLETVINEEPINEEEPRVVVDEIENKEEQVSPEDKSAPLEKRASGEHGAVGITTPLLVCSDDDKGKRVVAVEKPMRRFTRSVLKQKTENTNMVNDGEGDAIVVIGVGAADDNVQNETEVVTETDASPQFTTPTPAKGSRRGMKRFPTKLKDLLATGILEGLQVKYVRGLKARRPGEAGLQGVIRDSGVLCYCPDCKGNKVVTPTVFELHAGSANKRPPEYMYLENGNTLRDIMNACWNFPLDTMEEAVQKVLGGFTLKKSNICFNCRGGNGSSRLLLCDSCMELKDTQPSHRQTKSVDQNTVTSTRSVAQTPMTSTKSVGQTPLTSTKSVAQTPVTSTKIVAQTPVTGSKTVSQTTMTSTTVVSFAVQPRSPEPQSEPEPVAVPKSLNNGMKHSTSHGRSQGRITRKYEDVLADGTELAYYAHGEKKLVGYKKGYGIFCTCCKSEVSASQFEAHAGLASRRKPYLHIYTPDGVSLHDLSISLSKDRRFAISENDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPTGTWYCKYCQNLYGEHNVNAQAKDRRCVRVVKTNKVDHGGCALCRLYYFSKSFGPRTVIICDQCEKEYHVGCLKEHNIQNLEELPEGNWFCGTSCGQIHSALVNLVASGENSLPDSLLSLIKRKHEEKGLDAVDGLDIKWRLLNWKRAASVDTRKLLSKAVAIFHERFDPIVDSSSGRDFIPTMLFGRNIRGQDFGGMYCAVLTVNQVVVSAGIFRVFGLEVAELPLVATVADFQGKGYFQCLFSCMERLLASLNVKHLVLPAAEEAESIWTSKFGFTKLEQEEINNYKKFYRMMIFQGTSLLHKPVPMPEQN 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 445 482 - -
Arst26235082g00022 992 Pfam Tify domain binding domain 333 388 IPR032308 -
Arst26235082g00022 992 Pfam Tify domain binding domain 582 630 IPR032308 -
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 32 141 - -
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 107 122 - -
Arst26235082g00022 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 714 777 IPR013083 -
Arst26235082g00022 992 PANTHER AUTOIMMUNE REGULATOR 45 986 - -
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 41 55 - -
Arst26235082g00022 992 SUPERFAMILY FYVE/PHD zinc finger 717 771 IPR011011 -
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 62 78 - -
Arst26235082g00022 992 SMART PHD_3 648 689 IPR001965 -
Arst26235082g00022 992 SMART PHD_3 719 774 IPR001965 -
Arst26235082g00022 992 ProSiteProfiles Zinc finger PHD-type profile. 646 691 IPR019787 -
Arst26235082g00022 992 Gene3D - 816 984 - -
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 177 194 - -
Arst26235082g00022 992 SUPERFAMILY FYVE/PHD zinc finger 642 691 IPR011011 -
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 274 294 - -
Arst26235082g00022 992 Pfam PHD-finger 649 690 IPR019787 -
Arst26235082g00022 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 710 IPR013083 -
Arst26235082g00022 992 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 872 965 IPR016181 -
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 519 554 - -
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 177 197 - -
Arst26235082g00022 992 CDD PHD1_AIRE 648 688 - -
Arst26235082g00022 992 MobiDBLite consensus disorder prediction 440 482 - -
Arst26235082g00022 992 ProSitePatterns Zinc finger PHD-type signature. 649 688 IPR019786 -
Arst26235082g00022 992 FunFam PHD finger family protein 816 985 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235082g00022 298 986 PHD Transcription Factor Family AT2G36720 44.490 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst26235082g00022 TDBD 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235082g00022 - - gmx:100803825 1090.49