Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235082g00020 ATGATTTCAACAAGTATCGAACAAAATCAAGGGTTGATGATGCAGATGTTCCCTACTCCTCCTCCTGGGAGCGAGGATTTGGTGTCACAACAATCTATGGAAATAGTTAATAACTCTTCTGTTGGTTCTTCTTCTTCATCTACAGCTGCTGCTGCTGCTTCTTCTTCTTCACACTCAAGCTCCCTTCTCTTCAATCTCTCTGTTCTCAAGGACAAGCTTAATCAGGTTCAGACCCTGGTTGGTGTTATTCTCTCCCCAGATCAGAACCTTCAGGACTCAACTACCTCCATGGCTGTTTCAAGCATGAACTCCACAATCCAAGAAATCATACCTCCTCCTCCTCCTCCTCCTCCTCCAGGTACCATTGCTACTACTGTTGCTTTCGCCAACAACCACCATGAATTGCACCAACAACAACATCAAAGGTTATTGATCAATAATAACAATAATAATCTTAGAGGTTTCTTTTCTAGCACTACTGATTCTGAGGCACTGGATAATTGGCTTGGTGAAAGCTATAACAATACTGGTGGTGTTGATTGTAAGGTTAATAATAACGATGATGATGATCCAAGTGTTGAAATTAGTGATAGCAAAGAAGGAGCAAAGAAGTTGGATATAATTGAATTGGATGCTGCGGATTTGTTGGCGAAATACACACATTACTGCAGTGTTTGTGGGAAAGGGTTCAAGCGGGATGCGAATTTGAGGATGCACATGAGAGCTCACGGTGATGAATACAAAACGAGTGCCGCATTGAGTAACCCATTGAAGCAGAACAATAACGGCGAGAATGGTGATTGCTTGCCGAAGAAGTACTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACGCAAAGTTTCAGCCATTGAAGTCAATGATATGTGCAAAGAATCACTACAAGAGAAGCCATTGTCCGAAGATGTACGTGTGCAAGAGGTGTAACCAGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCTTGTGGCACCACTTTCTCCAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTTGTTGGCCACCGAGCCCTTTCCATTGCCTTCCACCAATACAATAGTGCAGCTTAA 1134 0.4374 MISTSIEQNQGLMMQMFPTPPPGSEDLVSQQSMEIVNNSSVGSSSSSTAAAAASSSSHSSSLLFNLSVLKDKLNQVQTLVGVILSPDQNLQDSTTSMAVSSMNSTIQEIIPPPPPPPPPGTIATTVAFANNHHELHQQQHQRLLINNNNNNLRGFFSSTTDSEALDNWLGESYNNTGGVDCKVNNNDDDDPSVEISDSKEGAKKLDIIELDAADLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPLKQNNNGENGDCLPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHRALSIAFHQYNSAA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235082g00020 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 248 IPR013087 -
Arst26235082g00020 377 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 36 365 IPR044300 GO:0010044|GO:0010447
Arst26235082g00020 377 MobiDBLite consensus disorder prediction 1 15 - -
Arst26235082g00020 377 SUPERFAMILY beta-beta-alpha zinc fingers 219 246 IPR036236 -
Arst26235082g00020 377 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Arst26235082g00020 377 Gene3D Classic Zinc Finger 221 267 - -
Arst26235082g00020 377 Gene3D Classic Zinc Finger 309 359 - -
Arst26235082g00020 377 MobiDBLite consensus disorder prediction 1 29 - -
Arst26235082g00020 377 FunFam Zinc finger protein 574 220 245 - -
Arst26235082g00020 377 SMART c2h2final6 311 333 IPR013087 -
Arst26235082g00020 377 SMART c2h2final6 221 243 IPR013087 -
Arst26235082g00020 377 SMART c2h2final6 273 306 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235082g00020 46 363 C2H2 Transcription Factor Family AT5G22890 49.560 1.73e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst26235082g00020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235082g00020 - - gmx:100802769 372.089