Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235080g00126 ATGAGGGTAGTTATTGTTACAAGAATAAACCAATTCTTCATTGAAGTAGGTGCCCAAGAAACAGTTTCCGAGATCAAAAGAAAAATAGAACAAATTCATGGTACTCCAGCAGCTTCACAAATCCTAACAGTTTCTGGATGGGAACTAGTGGATGGCTTAGACATGGAAGACTATCCTATAGTCACTGAAGGTACAAAAATTGACCTCAATATCAAACCAAGCACAGAACCACATTTTAACCAGGTTAACAAAATGCAAATCACAGTGAAATTTTCAGCTAGAAGGATCAAGATAGAGGTGGACAGAACAGATACTGTTCGGAGCTTAAAGGAAAAAATCCACATAATTGACAGCACCCCCATCAAAAGAATGACACTAGTTTTTTCAGGGGTGGAGTTGAACGAAGATTTCAGAAAGCTAAGTGAGTATGGCATACGTGAGTCTTCTGAAATTGTTGTGTTCCTCAACACCATAACTAGGGCAAGAGATGAAGCTCCCTCAAGGAAGGTGAGCCTGGTGGTAAAAACTTCCTCTAGTTTGCTTAATGCAGCAACTATTCCCCTGGAGATGAGAGATGCATGCACTGTAAATGACTTAAAGCAGTTGTTGTTAAGCAGAAAAATTCTGCCTGTTGATGACTACTTATTTATTCATAGGCAAAGGATCATGAGGGATAGCTGCAGCCTCAGATGGCACGGTGTTGAAAATGGAGACTGCCTCTATGTGTTCAAAGGGACAGTTAGTCGCAGTGGATATCACTAA 762 0.4042 MRVVIVTRINQFFIEVGAQETVSEIKRKIEQIHGTPAASQILTVSGWELVDGLDMEDYPIVTEGTKIDLNIKPSTEPHFNQVNKMQITVKFSARRIKIEVDRTDTVRSLKEKIHIIDSTPIKRMTLVFSGVELNEDFRKLSEYGIRESSEIVVFLNTITRARDEAPSRKVSLVVKTSSSLLNAATIPLEMRDACTVNDLKQLLLSRKILPVDDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSRSGYH 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235080g00126 253 Pfam Ubiquitin family 10 73 IPR000626 GO:0005515
Arst26235080g00126 253 Pfam Ubiquitin family 87 156 IPR000626 GO:0005515
Arst26235080g00126 253 CDD Ubl_ubiquitin_like 185 243 - -
Arst26235080g00126 253 ProSiteProfiles Ubiquitin domain profile. 170 242 IPR000626 GO:0005515
Arst26235080g00126 253 Gene3D - 157 249 - -
Arst26235080g00126 253 CDD Ubl_ubiquitin_like 3 69 - -
Arst26235080g00126 253 SUPERFAMILY Ubiquitin-like 78 157 IPR029071 -
Arst26235080g00126 253 PANTHER UV EXCISION REPAIR PROTEIN RAD23 85 156 - -
Arst26235080g00126 253 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Arst26235080g00126 253 SUPERFAMILY Ubiquitin-like 10 74 IPR029071 -
Arst26235080g00126 253 Gene3D - 84 156 - -
Arst26235080g00126 253 Gene3D - 1 73 - -
Arst26235080g00126 253 ProSiteProfiles Ubiquitin domain profile. 85 156 IPR000626 GO:0005515
Arst26235080g00126 253 SUPERFAMILY Ubiquitin-like 167 247 IPR029071 -
Arst26235080g00126 253 CDD Ubl_ubiquitin_like 87 154 - -
Arst26235080g00126 253 SMART ubq_7 170 245 IPR000626 GO:0005515
Arst26235080g00126 253 SMART ubq_7 85 156 IPR000626 GO:0005515
Arst26235080g00126 253 SMART ubq_7 1 72 IPR000626 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235080g00126 85 155 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.111 2.18e-06 44.3