Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235080g00109 ATGGAGGTGCACTTGCTTACAAGGCATGGCAGCATGGTGATGGTGTTGTTCCTCTTGGTTTTCTGCTCCTGGATTCCAATAGAAGTGGTGGGGAGGACAGGAGCTACCATTGGAAATGCTACCGTTTCTTCTTCGAGTCCAAGAGTTTTGAAAATTGGGGTGCTGTTTACTTTGAATTCTGTCATTGGAAGATCAGCTAAAGCTGGTGTATTGGCTGCTATTGATGATGTTAATGCTAACAAAAGCATCCTTCGTTCGACTAAACTTGAAATTATGTTGCATGATACAAATTGCAGCGGGTTTCTTGGAACCGTGGAAGCTCTGCAGTTGATGGAGAATGAAGTGGTTGCTGCAATTGGTCCACAATCATCTGGAATAGCTCATGTCATCTCTCATGTGGCTAATGAACTCCATGTGCCTCTTCTTTCATTCGCGACAGACCCTGCTTTAGTGTCACTCCAGTATCCATATTTCATCCGCACCACGCCAGATGACTATTTCCAGATGTATGCAATTGCAGACTTGGTTGATCACTATAGGTGGAGGGAGGTAATAGCTATCTTTGTAGATGATGACAATGGAAGAAATGGAATTTCAGTGTTGGGCGATGCGCTTGCTAAGAAACGTGCCAAGATATCTTACAAGGCCGCATTCCCTCCTGGAGCCCCCATGAGTAATATCAGTGACTTGTTGAATCAGGTGAACCTGATGGAATCACGTGTTTATGTGCTGCATGTTAATCCTGATTCTGGCTTGTCAATTTTTGCACTTGCCAAGAAGATTGGGATGATGACTAGTGGCTATGTGTGGATTGCAACAGATTGGCTTCCTTCTGTGCTGGATTCTATGGAGCAGGTTAACACTGACACCCTTAATATACTACAAGGAGTTGTTGCTCTGCGGCATCACACGCCTGACACTGATCTTAAGAAGAGTTTCATCTCAAATCTGAAGAGCAGAAAGAACAATGAGACTGCAGGCTTCAATTCTTATGCATTCTATGCATATGATTCTGTTTGGTTAGCAGCGCGTGCTCTGGATACTTTTCTCAATGAAGGTGGAAACATATCTTTCTCCTCGGATCCTAAGTTGCAAGACACAAATTCAAGTATGTTGCATTTTTCAGCACTCCGTGTGTTTGATGGCGGCGATAAGTTTCTTCAGACAATTCTGAAAACAAACTTCACTGGTGTGAGTGGCCCAGTTCAGTTTGGTATGGATAAGAATTTGATTCATCCAGCTTATGATATCATGAATATCGGCGGGTTTGGAACTCGTAGGATTGGTTATTGGTCTAATTATTCTGGTCTCTCAGTTATAGCTCCTGAAATTTTGTATCTGAAACCACCTAACGCTTCGGCAAGCAACCAACACCTATATAGTGTTATATGGCCTGGAGAAACAACAGTTACACCAAGGGGATGGGTATTCCCAAACAATGGGAAACCATTGAGAATCGCAGTGCCTAATCGAGTAAGCTATTTGGAGTTTGTTGGTAAGGACAAGAACCCTCCTGGGGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAAGTTGTTGCCTTATCCTGTTCCAACAGAATATATATTATATGGTCATGGTGATAGAAATCCCAGCTATGATGACCTTGCATATCAGGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATATTACAATTGTCACCAACAGGACAAGGATTGTGGATTTTACTCAGCCTTACATGGAATCAGGGCTGGTGGTTGTTGTTCCTGTTAAGGAAATCAAGTCAAGCCCTTGGTCCTTTCTAAAGCCATTCACCACTAAAATGTGGTTAGTTACTGGTGCATTCTTTCTCTTCGTGGGAGCCGTCGTGTGGATTCTTGAGCACCGGCACAATGAAGAATTCCGCGGTCCTCCAAGGAAACAAATTATAACAGTGTGTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGCACTCGGTCGATTGGTTCTACTCATATGGCTTTGGGTGGTTTTAATCATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTTTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATCCAAGAAGGATCTTTTGCGAAAAAGTATCTGACAGATGAACTCAACATAGCACCATCTAGGATAGTTACACTGAAAAATATGGAGGCATATGTTGATGCTCTTGAACGCGGACCAAGGAATGGAGGGGTTGTGGCCATTGTTGATGAGCTTCCTTATATTCAGCTCTTCATGTCCAATACCAACTGTAAGTTCAGAACAGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAAAGGGATTCACCGCTTGCTGTTGATTTGTCAACTGCCATCCTTCAACTTTCGGAGAACGGGGAACTGCAAAAGATCCATGACAAATGGCTTTTGAAGCGAGACTGCACTGCGCAACTCAATGTTGAAGACTCAAATAAACTGTCTCTGAGTAGCTTCTGGGGCCTCTTTCTCATATGTGGCATTGCATGCTTCCTTTCTTTGGTTGTATTCTTTGTTAGAGTGTTCTGTCAATACACCAGATTTAGCCCTGAGCCTGAACAAGTTGATGTGGAAATTCAACCAAGGCCTCCTAGAAGGAACCTCAAAAGTACTAGTTTCAAGGACTTGATGGAATTTGTGGATACCAAAGAAAAAGAAATCAAAGAGAGACTTAGGAAAAGTAAAAGGAGAAGAAGCCAGAGTCTAGATGAGCAATCTAGTTCATCACCCTCCTAA 2820 0.4266 MEVHLLTRHGSMVMVLFLLVFCSWIPIEVVGRTGATIGNATVSSSSPRVLKIGVLFTLNSVIGRSAKAGVLAAIDDVNANKSILRSTKLEIMLHDTNCSGFLGTVEALQLMENEVVAAIGPQSSGIAHVISHVANELHVPLLSFATDPALVSLQYPYFIRTTPDDYFQMYAIADLVDHYRWREVIAIFVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGAPMSNISDLLNQVNLMESRVYVLHVNPDSGLSIFALAKKIGMMTSGYVWIATDWLPSVLDSMEQVNTDTLNILQGVVALRHHTPDTDLKKSFISNLKSRKNNETAGFNSYAFYAYDSVWLAARALDTFLNEGGNISFSSDPKLQDTNSSMLHFSALRVFDGGDKFLQTILKTNFTGVSGPVQFGMDKNLIHPAYDIMNIGGFGTRRIGYWSNYSGLSVIAPEILYLKPPNASASNQHLYSVIWPGETTVTPRGWVFPNNGKPLRIAVPNRVSYLEFVGKDKNPPGVKGYCIDVFEAAIKLLPYPVPTEYILYGHGDRNPSYDDLAYQVAQNNFDAVVGDITIVTNRTRIVDFTQPYMESGLVVVVPVKEIKSSPWSFLKPFTTKMWLVTGAFFLFVGAVVWILEHRHNEEFRGPPRKQIITVCWFSFSTMFFSHRENTVSALGRLVLLIWLWVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFAKKYLTDELNIAPSRIVTLKNMEAYVDALERGPRNGGVVAIVDELPYIQLFMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGELQKIHDKWLLKRDCTAQLNVEDSNKLSLSSFWGLFLICGIACFLSLVVFFVRVFCQYTRFSPEPEQVDVEIQPRPPRRNLKSTSFKDLMEFVDTKEKEIKERLRKSKRRRSQSLDEQSSSSPS 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235080g00109 939 SUPERFAMILY Periplasmic binding protein-like I 44 476 IPR028082 -
Arst26235080g00109 939 FunFam Glutamate receptor 595 725 - -
Arst26235080g00109 939 Gene3D - 72 412 - -
Arst26235080g00109 939 MobiDBLite consensus disorder prediction 918 939 - -
Arst26235080g00109 939 Gene3D - 596 719 - -
Arst26235080g00109 939 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Arst26235080g00109 939 Gene3D - 720 828 - -
Arst26235080g00109 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 51 908 IPR015683 -
Arst26235080g00109 939 Pfam Bacterial extracellular solute-binding proteins, family 3 504 826 IPR001638 -
Arst26235080g00109 939 FunFam Glutamate receptor 721 829 - -
Arst26235080g00109 939 CDD PBP1_GABAb_receptor_plant 51 439 IPR044440 -
Arst26235080g00109 939 PIRSF IGluLR_plant 9 939 IPR017103 -
Arst26235080g00109 939 Gene3D - 164 437 - -
Arst26235080g00109 939 Gene3D - 479 595 - -
Arst26235080g00109 939 FunFam Glutamate receptor 164 332 - -
Arst26235080g00109 939 FunFam Glutamate receptor 479 595 - -
Arst26235080g00109 939 PIRSF IGluLR_plant 9 939 IPR017103 -
Arst26235080g00109 939 SMART GluR_14 485 827 IPR001320 GO:0015276|GO:0016020
Arst26235080g00109 939 CDD GluR_Plant 482 825 - -
Arst26235080g00109 939 SUPERFAMILY Periplasmic binding protein-like II 459 826 - -
Arst26235080g00109 939 Pfam Receptor family ligand binding region 68 420 IPR001828 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235080g00109 47 792 Ion Channels AT1G05200 68.675 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235080g00109 K05387 - gmx:100799912 1403.65