Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235080g00063 ATGGAGGGATCCCCTGGGATTGAAGATAGCAGCAAGTCTGAGGCGCATTTGACTTCAGCTGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGACGATGCTTGCAGCATCTGTCTTGAAGCCTTCTGTGACAGTGATCCTTCCACCGTGACAAGTTGCAAGCATGAGTTTCATTTTCAGTGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGTCCCATGTGTTGGCAACCCATCAGTCTCAAAGATCCATCCAGCCAGGAACTTCTTGAGGCTGTGGAAAGAGAGAGGAACTTTAGGTTAAATCCACCTAGAAATGCCACAATATTTCATCATCCAACTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAGGAGCATATAATCCAACACTTGGCTGCTGCTGCTGCAATGGGCCGAGCACGTCACATTGCAAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCTCATTTTTTGGTATGGTCGACCCATCCCAATTCTCCTCCTGTCGCTCCTGCTTCTTCTTCTCCTACTCACAGCCAGAGGGGGGATGGTGAACAAACACCTGCAGTTGCTTTTGCCACTCTTTCTCCAGCTCCTGCAACTGGAGAAGAATCACCACAGCTTACTTCAGTTCCTCCTGTTCTAGCTGAACAGGTTTCTGCTTCAGGATCTGGGTCTGCTGTACACAGCATTGATCATCAGGGATCATCTAACAATAGGAGATCTCCTAGCCAGTCTTCTCCAAGTAGTCAGGATAGAGCGGGGCCATCGGAATTACAGTCCTTTTCAGAATCCCTGAAATCTAAATTAAATGCTGTGTCGTCAAGATACAAGGAGTCAATTTCCAAGAGCACAAAAGGGTGGAAGGAGAGATGGTTCTCTCGTAATACTTCTATGTCTGATATTGGATCTGAAGTCAGACGAGAAGTTAATGCTGGGATTGCAACCGTGTCACGAATGATGGAACGCCTGGAAACTAGAGACAGTAACAGAAGTAATAGCAATACCAATAGCAATACTGCACCAAGTAATTTGGAGCATGGTTCAGGTCAGGGATCAAGTGATCAGCTTTTAACAGAAACTGAAGGGAGTCAACTGAGAGACACCAACACAAAAACATCTTGTGCTGCAGGTTCTAGTTCTAGTTAA 1191 0.4652 MEGSPGIEDSSKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHFQCILEWCQRSSQCPMCWQPISLKDPSSQELLEAVERERNFRLNPPRNATIFHHPTLGDFELQHLPVGANDADLEEHIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVWSTHPNSPPVAPASSSPTHSQRGDGEQTPAVAFATLSPAPATGEESPQLTSVPPVLAEQVSASGSGSAVHSIDHQGSSNNRRSPSQSSPSSQDRAGPSELQSFSESLKSKLNAVSSRYKESISKSTKGWKERWFSRNTSMSDIGSEVRREVNAGIATVSRMMERLETRDSNRSNSNTNSNTAPSNLEHGSGQGSSDQLLTETEGSQLRDTNTKTSCAAGSSSS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235080g00063 396 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Arst26235080g00063 396 Pfam Ring finger domain 35 76 IPR001841 -
Arst26235080g00063 396 MobiDBLite consensus disorder prediction 180 198 - -
Arst26235080g00063 396 MobiDBLite consensus disorder prediction 232 295 - -
Arst26235080g00063 396 MobiDBLite consensus disorder prediction 171 199 - -
Arst26235080g00063 396 SMART ring_2 36 76 IPR001841 -
Arst26235080g00063 396 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 85 - -
Arst26235080g00063 396 MobiDBLite consensus disorder prediction 344 396 - -
Arst26235080g00063 396 MobiDBLite consensus disorder prediction 232 318 - -
Arst26235080g00063 396 FunFam E3 ubiquitin-protein ligase RHF2A 7 110 - -
Arst26235080g00063 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 85 IPR013083 -
Arst26235080g00063 396 SUPERFAMILY RING/U-box 29 83 - -
Arst26235080g00063 396 MobiDBLite consensus disorder prediction 335 396 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235080g00063 33 84 C3H Transcription Factor Family AT4G00335 42.308 1.74e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235080g00063 K19043 - gmx:100814908 590.112