Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235080g00041 ATGGATAATGAAATTGAGGTTCCTGCACATTTTCTCTGCCCAATATCCCTTCAACTCATGAGAGACCCTGTAATCGTTTGCAGCGGTATCACTTACGACAGAGAGAACATAGAGAAATGGTTATTCTCATGCAAAAACAAAGCATGCCCGGTTACCAAACAGTCCCTAATACAACACACAGATCTTGATCTTATTCTTACTCCAAACCACACCCTACGAAGGCTCATCCAATCATGGTGCACCGTAAACGCCTCTCTCGGAATCGAGCGTATCCCTACTCCAAAACCGTCCATGGACGCATCGTCTCACATCGCCAAACTCATCTCCGAAGCGAAGCGATTCCCGGAGGCTAAGGAGAACTGCCTCGCAACACTCAGATCCATGGCGTTCTTTGAAAGGAACAAGAGCTGTTTCCAGTCTTCAGGTGCAATAGAGTTCTTAGCTACAATCATGATGAACAACAACAATCGCGCAGAAGAAGAAGAACGAGTAGATCCAACTGAAACAGCGATTGAGATCTTGTTTCATCTTGATCTCTCGGAAAATCAGATCAAGAAGCTAATCAACAACGAGTGCCTTCAGTTTCTTGAATCGTTGCTGCAAGCGTTGAAGCGTGGGAGCTGCCAATCAAGAGCGTACGCAACACTTCTTTTGAAATCGGCATTTGCGGTTTCAAATCCGATCCAGTTAATCAGCGCGAAAACCGAAATGCTGTTTGAAATCACGAGAGTGATACGCGATCGTATATCGCAGCAGGCTCATAAGGCGGCATTGAAGCTGGTGGTTGAGCTCTGTCCATGGGGAAGAAACAGAATCAAAGCGGTGGAAGCCGGCGCGGTGTCCGTGCTCGTGGAAGTGCTTCTTGATTCGACGGAAAGAAGAACGTGTGAGCTGGCGTTAATGGCGTTGGATCAGCTTTGCGGTTGCGCGGAAGGGCGCGCGGAGTTGGTGAAGCACGGCGCGGGAATCGCCGTGGTTTCGAAGAAAATATTGAGAGTTTCACGCGCCGCGAGTGACAGAGGAGTTAGGATATTAGCGTCGGTTTGTAGGTTCTGTGGAAGCGGGAGAGTGGTTCAAGAGATGATGCAGGTTGGAGCCGTTAACAAGCTGTGTTTGGTGCTTCAAGTTGATAGCGCTTTGAAGACCAAAGAGAGGGCTAAAGAGATTCTCAAGTTGCATTCTCTGGTTTGGAAGAATTCAACATGTATTCCTCTACCTTTGTTATCATCGTATCCATGA 1239 0.4762 MDNEIEVPAHFLCPISLQLMRDPVIVCSGITYDRENIEKWLFSCKNKACPVTKQSLIQHTDLDLILTPNHTLRRLIQSWCTVNASLGIERIPTPKPSMDASSHIAKLISEAKRFPEAKENCLATLRSMAFFERNKSCFQSSGAIEFLATIMMNNNNRAEEEERVDPTETAIEILFHLDLSENQIKKLINNECLQFLESLLQALKRGSCQSRAYATLLLKSAFAVSNPIQLISAKTEMLFEITRVIRDRISQQAHKAALKLVVELCPWGRNRIKAVEAGAVSVLVEVLLDSTERRTCELALMALDQLCGCAEGRAELVKHGAGIAVVSKKILRVSRAASDRGVRILASVCRFCGSGRVVQEMMQVGAVNKLCLVLQVDSALKTKERAKEILKLHSLVWKNSTCIPLPLLSSYP 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235080g00041 412 Pfam U-box domain 7 82 IPR003613 GO:0004842|GO:0016567
Arst26235080g00041 412 SUPERFAMILY RING/U-box 5 84 - -
Arst26235080g00041 412 SUPERFAMILY ARM repeat 114 229 IPR016024 -
Arst26235080g00041 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Arst26235080g00041 412 FunFam RING-type E3 ubiquitin transferase 1 89 - -
Arst26235080g00041 412 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Arst26235080g00041 412 SUPERFAMILY ARM repeat 196 377 IPR016024 -
Arst26235080g00041 412 PANTHER WDSAM1 PROTEIN 4 404 IPR045185 GO:0061630
Arst26235080g00041 412 CDD RING-Ubox_PUB 8 62 IPR045210 -
Arst26235080g00041 412 ProSiteProfiles Leucine-rich repeat profile. 173 194 IPR001611 GO:0005515
Arst26235080g00041 412 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Arst26235080g00041 412 Gene3D - 96 400 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235080g00041 1 412 U-box Gene Family AT2G35930 52.518 3.39e-147 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235080g00041 - - gmx:100778012 560.836