Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235080g00040 ATGGCGGAAATCAAAGTTCCTGAGTTGTTGCTGTGTCCCATCTCGCTTGAGATAATGAAGGATCCGGTGACAACCGTAACAGGGATAACATACGACAGAGAAAGCATAGAAGAATGGCTGCAGCAGAAATCTAATAAGAAGGATTGTATGTGTCCCGTTACAAAGCAACCATTGCCGACGGACCCTCATTTCTTGACTCCAAACCACACCCTCCGGAGGTTTATCCAAGGCTGGTGTTCAGCCAACCAATCCAACGTCGTCGATCGGATTACCACCCCCAGGTCCCCTCTCGACAACTCCCAACTTCACAAACTCCTCACAGATCTTGATGCTCCTCGCACCTTTCAAACCTCATTGAACAAGATGCATGATCTAGCCACTCAGAGCCAGAGGAACCGCAACTTCATGGCTCAACAACCAGTACCCAAGGCCATGGTACAATTCATCACAACCACTTTCAAACAAGGCGAAACCAGCGGCGTTGAAGAAGCTCTGAGAATTCTTCGCTTACTATGGAGGAGCACTTCATCATCATCATCATCGTCATCCTCGCCAACAACTGGCGGCGGCGGCGGCACAAACATGAAGCCCCTGGTAGGTGAAACCTTGGACTTCATCAAATCGTTGACTTGGATTCTTCAACTCCCAATAATCGACAATGACCTTAACATGGTTAACGAAGCAATGCAAATTCTAAAGCTGACCATCGAAATCACCGATTCAACGCTCTTGGGAAGCTTAAACCACGAGTTCTTCAAACAAATCGTGAGCACCATGAGGAGACTAAGCAAATCATCATCATCAATTCCCCAAAATGCCCTCAAATCCGCGTTACACGTGCTCATAGAAACATGCCCCTTAGGAAGAAACAGAACGAAGATCGTGGAATCCGGTGCAGTTGGCGAACTCATCGAACTGTCCATGGATAAACCAACGGAGAAGAACCTAACGGAGCTTATATTCAAGGTGTTGGGTCAACTGTGCTCGTGTGCAGAAGGGAGAGAAGAGTTCTTGAAGCACCCGGCGGGAATCGCTGTTGTTTCGAAGAGGACGCTGAGGGTATCGGCAGCGACTGATGATGGAGCCCTTCATGTGTTATGGCTGATTTCAAAGTTTTCAGCTACGAATGAGGTGGTTCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTATGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAACAAAAGGCAACAGATATTCTTAGGTTTCATTCAAAGGCTTGGAATAATTCTCCTTGTATTCAACTCTATTTGTTAACTAGACACCCAAGATGA 1305 0.4674 MAEIKVPELLLCPISLEIMKDPVTTVTGITYDRESIEEWLQQKSNKKDCMCPVTKQPLPTDPHFLTPNHTLRRFIQGWCSANQSNVVDRITTPRSPLDNSQLHKLLTDLDAPRTFQTSLNKMHDLATQSQRNRNFMAQQPVPKAMVQFITTTFKQGETSGVEEALRILRLLWRSTSSSSSSSSSPTTGGGGGTNMKPLVGETLDFIKSLTWILQLPIIDNDLNMVNEAMQILKLTIEITDSTLLGSLNHEFFKQIVSTMRRLSKSSSSIPQNALKSALHVLIETCPLGRNRTKIVESGAVGELIELSMDKPTEKNLTELIFKVLGQLCSCAEGREEFLKHPAGIAVVSKRTLRVSAATDDGALHVLWLISKFSATNEVVQEMLRVGAVSKLCMVMQADCASYLKQKATDILRFHSKAWNNSPCIQLYLLTRHPR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235080g00040 434 CDD RING-Ubox_PUB 7 61 IPR045210 -
Arst26235080g00040 434 MobiDBLite consensus disorder prediction 176 195 - -
Arst26235080g00040 434 Pfam U-box domain 6 83 IPR003613 GO:0004842|GO:0016567
Arst26235080g00040 434 SMART Ubox_2 9 78 IPR003613 GO:0004842|GO:0016567
Arst26235080g00040 434 MobiDBLite consensus disorder prediction 176 191 - -
Arst26235080g00040 434 Gene3D - 100 420 IPR011989 -
Arst26235080g00040 434 SUPERFAMILY RING/U-box 4 87 - -
Arst26235080g00040 434 ProSiteProfiles U-box domain profile. 5 85 IPR003613 GO:0004842|GO:0016567
Arst26235080g00040 434 PANTHER WDSAM1 PROTEIN 3 425 IPR045185 GO:0061630
Arst26235080g00040 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 92 IPR013083 -
Arst26235080g00040 434 SUPERFAMILY ARM repeat 221 412 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235080g00040 3 431 U-box Gene Family AT3G11840 38.723 2.29e-93 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235080g00040 - - adu:107461999 827.78