Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26235080g00029 ATGGAAGGTAGCCACATCATGGCAGTGTTGTTCTTTCTCTTCTTTGGCCTAATTATGAGAATGTGTTATGGTGACACAGACCCAAATGATCTCAAAGTTCTGAATTCTTTCAGAAAAGGGTTAGAGAATCCCGAGCTTCTGAAATGGCCGGAAGATGGAGATGATCCATGTGGCCCTCCTTCATGGCCTTATGTGTTCTGCAGTGGTGATAGAGTCACTCAGATTCAGGCCAAGAATCTTGGACTCAGAGGAACATTGCCTCCAAATTTCAATCAGCTATCAGAACTCTACAACTTGGGCCTTCAAAGGAACAATCTCACTGGGATGTTGCCTAGTTTCAGTGGATTATCTAAGTTGGAATTTGCTTTCTTGGATTACAATGCATTTGAAGCAATCCCTTCAGATTTCTTCAACGGACTTACCAGCTTGAGGGTTTTGTCTTTGGAAGAAAATTCATTGAATGGAACTAGTGGTTGGTCATTTCCTCTTGATTTGGAAAAATCAGTGCAACTAACCAATCTTTCTCTTGTTAATTGCAATTTGGTTGGACCGTTGCCGGATTTTCTAGGCACATTGCCTTCCCTAACGAACCTGAGGCTTTCCGGGAACAGGCTATCCGGTAAGATTCCGGAAACTTTTGCTCAATCTTCTATCCAGGTTCTATGGTTGAACAATCAAGAAGGTGAAGGGTTAACGGGTCCTATTGATGTTGTTTCTTCAATGATTTTCCTAAGACAGCTTTGGCTACATGGAAATCAGTTCAATGGGAGAATTCCACATGATATTGGAAACCTTACTTCCTTGCAAGAGCTCAACCTCAATAGTAATCAACTTGTTGGCTTGATTCCTGAATCCCTAGCAGAAATGGAACTTGAGTTACTGGTGTTGAACAATAACATGTTAATGGGTCCAATACCAGAATTTAAGGCTGCAAATGTTTCTTATAATAACAATTTCTTTTGTCAAATTAAGCCAGGGCATGAATGTGATCCTCAAGTTACTGCACTGCTAGATGTTCTGGATAATCTGAACTATCCATTGTTTCTCATTTCGGATTGGTCAGGCAACAATCCATGCACTGGAAGCACAGAGAGCACAGGGCCATGGTTCGGATTGAGCTGCAATTCCAACCACCAGGTATCTATAATCAATTTGCCACGGCACGAGCTCAACGGTACTCTTAGTCCCTCACTTGCTAAGTTAGATTCATTACTTGAAATTAGGCTAGAAGGAAATAACATAACTGGCATGGTTCCTAGTAATTTTTCTGAATTGAAATCTTTGAGGTTGTTTGATTTAAGTGACAACCGTCTTGAGCCCCCATTGCCAAATTTTCGCAAAGATGTTAAGGTTGTTATTGTGGGAAACCCTCTTCTTACTACTGAAAGTGGAGGAATGTCTCTGCCGCCTGAAAATTCACATCCTTCTCCAGACAACCTGTCACCCCCTTCATCCTCCTCTCATAAGGCACATGATCCCAATATGAATTCAAGTTCAAGTCAATCTAAACTGGATCATTCCAAAAGATTCAAGACAGTGGCAATTGTGTCTGGAATTACAGTCTTTGTAGTTGCTGTTCCTTTGGTTGTTTTCCTCTTCATTTGTTCCATGAAGAAGAAAAAGGCCTCCTTGGATGCTCCAAGTTCCATTGTGGTGCACCCGAGAGATCCATCCAATCGGGATAATGTGGTTAAAGTTACAGTCTCAGATACCACCACTGGAAGCTTATCAACTAAGACTGGGACAAGTTCTCTGAGTAACATTAGTGGTGAGACTCAAAACTCTCATATAATTGAGGCTGGAAACCTTGTCATTTCGGTTCAAGTCCTACGCAAGGTTACCAACAATTTCTCTTCAGAAAATGAGTTAGGCCGTGGAGGGTTTGGAACTGTGTACAAGGGTGAACTTGAAGATGGGACTAAAATAGCAGTGAAGAGAATGGAGCATGGTGTTATCAGCAGCAAGGCGCTGGAGGAGTTCGAAGCTGAAATCGCTGTTCTTTCAAAGGTTCGTCACAGGCATTTGGTATCTCTTTTGGGGTATTCCATTGGAGGCAATGAGAGACTTTTGGTTTATGAATATATGCCTCTTGGTGCTCTTAGCCAACATCTTTTCCATTGGAAAAGCTTGAAATTGAAACCATTGTCTTTGTCACAAAGGCTTGCAATAGCTCTAGATGTTGCTAGAGGAATCGAATACCTTCATGGTCTTGCCTGCCAGACCTTCATCCATAGAGACCTCAAGTCTTCTAATATTCTAATTGGTGATGATTTCCATGCAAAAGTTTCGGATTTTGGTCTTGTGAAGCTTGCTCCGGATGGTGAAAAATCTGTGGCAACCAAGCTTGCTGGAACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACCAAAGTTGATGTGTTCAGCTATGGGGTGGTCCTGATGGAACTACTGACTGGACTAACAGCGCTTGATGAGAGCCGCCCGGAGGAAAGACGATATCTAGCAGAATGGTTTTGGCGAATCAAATCAAACAAAGAAAAGCTCATGGCTGCCATTGATCCAGCTTTGGAAGCAACTGACGAGGCTTTCGAGAGCATATCCATTGTATCTGAACTCGCCGGACACTGCACTGCAAGGGAGGCACACCACCGGCCGGATATGAGTCATGTAGTGAATGTACTCGTGGCATTGGTTGAGAAATGGAAACCGGTTGACGATGAGTTAGATTACGACTCTGGTATTGACTACAGTAGACCGCTCCCACAAATGCTGAAGATTTGGAAGGAAGCAGAGAGCAATGAATTTAGCTATGGTGCCAGTACTGAAAACAGTAGAGGAAGTATAGCAGCCAAGCCTTCTGGTTTTGCTGATTCTTTTACCTCTGCTGATGCTAGATGA 2895 0.428 MEGSHIMAVLFFLFFGLIMRMCYGDTDPNDLKVLNSFRKGLENPELLKWPEDGDDPCGPPSWPYVFCSGDRVTQIQAKNLGLRGTLPPNFNQLSELYNLGLQRNNLTGMLPSFSGLSKLEFAFLDYNAFEAIPSDFFNGLTSLRVLSLEENSLNGTSGWSFPLDLEKSVQLTNLSLVNCNLVGPLPDFLGTLPSLTNLRLSGNRLSGKIPETFAQSSIQVLWLNNQEGEGLTGPIDVVSSMIFLRQLWLHGNQFNGRIPHDIGNLTSLQELNLNSNQLVGLIPESLAEMELELLVLNNNMLMGPIPEFKAANVSYNNNFFCQIKPGHECDPQVTALLDVLDNLNYPLFLISDWSGNNPCTGSTESTGPWFGLSCNSNHQVSIINLPRHELNGTLSPSLAKLDSLLEIRLEGNNITGMVPSNFSELKSLRLFDLSDNRLEPPLPNFRKDVKVVIVGNPLLTTESGGMSLPPENSHPSPDNLSPPSSSSHKAHDPNMNSSSSQSKLDHSKRFKTVAIVSGITVFVVAVPLVVFLFICSMKKKKASLDAPSSIVVHPRDPSNRDNVVKVTVSDTTTGSLSTKTGTSSLSNISGETQNSHIIEAGNLVISVQVLRKVTNNFSSENELGRGGFGTVYKGELEDGTKIAVKRMEHGVISSKALEEFEAEIAVLSKVRHRHLVSLLGYSIGGNERLLVYEYMPLGALSQHLFHWKSLKLKPLSLSQRLAIALDVARGIEYLHGLACQTFIHRDLKSSNILIGDDFHAKVSDFGLVKLAPDGEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLTALDESRPEERRYLAEWFWRIKSNKEKLMAAIDPALEATDEAFESISIVSELAGHCTAREAHHRPDMSHVVNVLVALVEKWKPVDDELDYDSGIDYSRPLPQMLKIWKEAESNEFSYGASTENSRGSIAAKPSGFADSFTSADAR 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26235080g00029 964 FunFam receptor protein kinase TMK1 695 912 - -
Arst26235080g00029 964 SMART LRR_typ_2 140 163 IPR003591 -
Arst26235080g00029 964 SMART LRR_typ_2 425 447 IPR003591 -
Arst26235080g00029 964 SMART LRR_typ_2 401 424 IPR003591 -
Arst26235080g00029 964 SMART LRR_typ_2 93 115 IPR003591 -
Arst26235080g00029 964 SMART LRR_typ_2 265 288 IPR003591 -
Arst26235080g00029 964 SMART LRR_typ_2 192 215 IPR003591 -
Arst26235080g00029 964 SMART LRR_typ_2 116 139 IPR003591 -
Arst26235080g00029 964 MobiDBLite consensus disorder prediction 462 504 - -
Arst26235080g00029 964 SUPERFAMILY L domain-like 26 309 - -
Arst26235080g00029 964 ProSiteProfiles Protein kinase domain profile. 617 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst26235080g00029 964 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524
Arst26235080g00029 964 Pfam Leucine rich repeat N-terminal domain 330 375 IPR013210 -
Arst26235080g00029 964 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Arst26235080g00029 964 SUPERFAMILY L domain-like 331 445 - -
Arst26235080g00029 964 FunFam receptor protein kinase TMK1 579 694 - -
Arst26235080g00029 964 SMART serkin_6 617 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst26235080g00029 964 Gene3D Ribonuclease Inhibitor 331 463 IPR032675 -
Arst26235080g00029 964 Pfam Protein tyrosine and serine/threonine kinase 620 893 IPR001245 GO:0004672|GO:0006468
Arst26235080g00029 964 Gene3D Transferase(Phosphotransferase) domain 1 695 911 - -
Arst26235080g00029 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Arst26235080g00029 964 SUPERFAMILY Protein kinase-like (PK-like) 592 901 IPR011009 -
Arst26235080g00029 964 CDD STKc_IRAK 623 893 - -
Arst26235080g00029 964 Gene3D Ribonuclease Inhibitor 28 327 IPR032675 -
Arst26235080g00029 964 FunFam Receptor-like kinase TMK4 28 326 - -
Arst26235080g00029 964 FunFam Leucine-rich repeat receptor-like kinase 331 462 - -
Arst26235080g00029 964 MobiDBLite consensus disorder prediction 937 964 - -
Arst26235080g00029 964 Gene3D Phosphorylase Kinase; domain 1 578 694 - -
Arst26235080g00029 964 MobiDBLite consensus disorder prediction 462 503 - -
Arst26235080g00029 964 PANTHER OSJNBA0070M12.3 PROTEIN 10 964 - -
Arst26235080g00029 964 PANTHER OSJNBA0070M12.3 PROTEIN 10 964 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26235080g00029 63 897 Receptor kinase-like Gene Family AT5G07180 29.419 3.66e-78 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Arst26235080g00029 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26235080g00029 K00924 - gmx:100785090 1468.37