LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst26235080g00019	ATGAAGCGCCAGGTGCCCCTCCCTTCCACCAAACCGCCTTTTGCTCCCCCCGCAGACTACCATCGCTTCGCCACCGACCACCGCACAACTTCTCAGAACGACGCCGACGCCATTGCCGTTAAAACTCCTCAATTAAAGCGGAAGAGTGTTACAACTGATCTTGAAGGTGATTCTGGTAATGTGACTCCAGCATCCACTGAAGCAGTTAATAGTCCTTTCCGGACACCTATCTCGAGGAAGACGGGAAAGGCAAGCAAATCCTCTCGACTTACAAAATGCAACAGATCAGGATCTCAAATCCCTGGATCAAATATCAGTTCACCATCAGCAAATAATCTCGCACCTTCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGAGACATTAGAGGTACAAAAGAGGAGGATATATGATATAACGAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTAAAGAACAGAATTCAATGGAAGGGACTGGATGTTTCAAGACCAGGGCAGGCTGTTGATAGTTTTGCTAGTTTACAGGCTGAAGTAGAAAATCTTACAAATGAGGAGCACCGGTTAGACGAGCAAATAAGAGAGATGCAAGAAAGATTAAGAGGTCTTAGTGAAGATGAAAACACTCAAAGGTATCTTTTTGTCACTGAGGAAGATATAAAGAGTTTGCCCTCATCTCAGAATGAAACCTTGATAGCAATTAAAGCTCCATATTGCACCACTTTGGAGGTCCCTGATCCTGATGAGGTTGTTGATTATCCTCAGAGGAAATACAGGATTATCCTGAGAAGCTCAACGGGCCCAATAGACGTTTATCTTCTTAGTCAATTTGAAGAGAAATTTGAGATTAATGGTGTTAATGTGGCCCCAAATATTCCATCAAGACCAGATTTCAATAAGCACCAATCAACAGTGGTCTCAAATGATAGAGGCAAGGACCTTGAAATGGGGATACAAGATGTATATAGGCCTTCAGATTTATCTAATTCACATGATTTTGCGGGTGGGATCACGAAGATTGTTCCTTCAGATTTTGAGAGTGACGCTGATTACTGGCTTTTATCGGATGCCGATGTTAGCATAACAGACATGTGGAGGACAGAACCCGGCGAAGTTGAATGGCATAATCTGGATACTCCAAAAGAAGATTATTGTATGACTCATGTGAGCCCACCACCTCCCCAAACCCCTCCCTCAAACATAAGTGAAGCACCTTCGGCATCTAACCCTCCTGTAGCTTGA	1320	0.4311	MKRQVPLPSTKPPFAPPADYHRFATDHRTTSQNDADAIAVKTPQLKRKSVTTDLEGDSGNVTPASTEAVNSPFRTPISRKTGKASKSSRLTKCNRSGSQIPGSNISSPSANNLAPSGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQAVDSFASLQAEVENLTNEEHRLDEQIREMQERLRGLSEDENTQRYLFVTEEDIKSLPSSQNETLIAIKAPYCTTLEVPDPDEVVDYPQRKYRIILRSSTGPIDVYLLSQFEEKFEINGVNVAPNIPSRPDFNKHQSTVVSNDRGKDLEMGIQDVYRPSDLSNSHDFAGGITKIVPSDFESDADYWLLSDADVSITDMWRTEPGEVEWHNLDTPKEDYCMTHVSPPPPQTPPSNISEAPSASNPPVA	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst26235080g00019	439	SMART	E2F_TDP_2	120	185	IPR003316	GO:0005667\|GO:0006355
	Arst26235080g00019	439	Gene3D	-	114	187	IPR036388	-
	Arst26235080g00019	439	MobiDBLite	consensus disorder prediction	54	112	-	-
	Arst26235080g00019	439	CDD	E2F_DD	196	302	IPR032198	GO:0046983
	Arst26235080g00019	439	Coils	Coil	136	156	-	-
	Arst26235080g00019	439	FunFam	E2F transcription factor 1	114	187	-	-
	Arst26235080g00019	439	Pfam	E2F/DP family winged-helix DNA-binding domain	122	185	IPR003316	GO:0005667\|GO:0006355
	Arst26235080g00019	439	PANTHER	TRANSCRIPTION FACTOR E2F	63	398	IPR015633	GO:0000978\|GO:0006357
	Arst26235080g00019	439	Coils	Coil	198	232	-	-
	Arst26235080g00019	439	MobiDBLite	consensus disorder prediction	413	439	-	-
	Arst26235080g00019	439	Gene3D	-	194	302	-	-
	Arst26235080g00019	439	MobiDBLite	consensus disorder prediction	1	112	-	-
	Arst26235080g00019	439	SUPERFAMILY	"Winged helix" DNA-binding domain	120	183	IPR036390	-
	Arst26235080g00019	439	Pfam	E2F transcription factor CC-MB domain	201	300	IPR032198	GO:0046983
	Arst26235080g00019	439	SUPERFAMILY	E2F-DP heterodimerization region	199	301	IPR037241	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst26235080g00019	2	439	E2F-DP Transcription Factor Family	AT5G22220	53.291	9.55e-141	409

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	E2F-DP	Arst26235080g00019		E2F_CC-MB	2.5e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst26235080g00019	K06620		-	gmx:100819817	613.224