LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst26234509g00001	ATGGCCACATTTTATAACTCCCTCACCTCCGCCACGGACGATCCTCTCTTACCATTCCTCTGGAGTGTCAAGAATGCTCTAGAAGGTTCCGGCGGTTCCAGCCAGAACCTGTTGAACTTACTAGGAGATTGCATTATAAGCTTCAAGGATAGCGAACAGTATCGAAACGACGTCAGATTTCTCAAGATTTGGATCCTCTATATGGGTGTTAGTTCAGATTTTGGAAGTGTTTTCATGGAAATGCTGAACTGCAATGTGTGTACCAAAAATGCTTCACTCTATGTGTGGTCTGCATGTTTCTTTGAGTTGAAAGGGAGGCTCCATGATGCCCTCACAATCTATCACCTTGGTATTTCCAGGAATGCAGAGCCAATTGAGTGGTTGAAGAAGGCACAGGCATTATGTCACCAGAGAATATCTGAAACTTGGAAGGCTGCTGAAAGGCAGAAGATTGATTATAAGGGATCCACAGAGTTGGGAAACATTGGCATTAATCCATGGGATTCCTCCATTTTGGAAGACCTGATGAAGAAGATAAATCCTACAATTAAAAAATTTTATGGGTATCACTTGAGCACTAAATCTTATACAGGGAAAGTGGCCTTATCTACTTTGAAGAATGCATCAAGGAACAAAGTTATAGAGATAGGCGGGAGGAAGTACCATATCAAAGGTTGCGCTGGACAAGGTGGTTTTGCTCAAGTATACAAGGCCTTTGTCAACAGTGATCCAAATGATGTTGTTGCGCTAAAGATACAAAAGCCAGCTTTCCCTTGGGAATTTTACATGTATCGTCAGCTTGATATGCGGATCACTGGCAGAGAAAGGTCAAGCTATGGTTTGGCTCAGAGAATTCATCTGTATGCAGACTGTAGCATACTCATCTGTGACTATTTAGCTCATGGAACGCTACAGGATGTCATAAACACATATGCGGTCCAAGGGAAACCCATGGAAGAAGTTTTATGTATTTATTACACGATAGAAATGTTACACATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTTATTCGCTATGCTAGGGATGACCTTACTGAAGAAGGGTTCTTGGACCGAAGTGGTCCTTCGTGTGATCAGACTGGGGAAGAGGGATTGTTCTGGATCTCTTTCCAGATGACATAG	1173	0.4246	MATFYNSLTSATDDPLLPFLWSVKNALEGSGGSSQNLLNLLGDCIISFKDSEQYRNDVRFLKIWILYMGVSSDFGSVFMEMLNCNVCTKNASLYVWSACFFELKGRLHDALTIYHLGISRNAEPIEWLKKAQALCHQRISETWKAAERQKIDYKGSTELGNIGINPWDSSILEDLMKKINPTIKKFYGYHLSTKSYTGKVALSTLKNASRNKVIEIGGRKYHIKGCAGQGGFAQVYKAFVNSDPNDVVALKIQKPAFPWEFYMYRQLDMRITGRERSSYGLAQRIHLYADCSILICDYLAHGTLQDVINTYAVQGKPMEEVLCIYYTIEMLHMVETLHGVGLIHGDFKPDNLLIRYARDDLTEEGFLDRSGPSCDQTGEEGLFWISFQMT	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst26234509g00001	390	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	342	354	IPR008271	GO:0004672\|GO:0006468
	Arst26234509g00001	390	Pfam	Protein kinase domain	221	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst26234509g00001	390	ProSiteProfiles	Protein kinase domain profile.	221	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst26234509g00001	390	Gene3D	Transferase(Phosphotransferase) domain 1	219	389	-	-
	Arst26234509g00001	390	SMART	mad3_bub1_i	2	118	IPR013212	-
	Arst26234509g00001	390	Pfam	Mad3/BUB1 homology region 1	7	118	IPR013212	-
	Arst26234509g00001	390	ProSiteProfiles	BUB1 N-terminal domain profile.	4	159	IPR013212	-
	Arst26234509g00001	390	Gene3D	-	4	154	-	-
	Arst26234509g00001	390	SMART	serkin_6	221	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst26234509g00001	390	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	155	387	IPR015661	GO:0007094
	Arst26234509g00001	390	SUPERFAMILY	Protein kinase-like (PK-like)	218	357	IPR011009	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst26234509g00001	215	354	MAP Kinase Kinase Kinase Kinase	AT1G53165	28.873	2.90e-08	53.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Arst26234509g00001		Pkinase	8.6e-09	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst26234509g00001	K02178		-	gmx:100783171	560.066