Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26234487g00393 ATGGAGCTTCCACATCAAAGTGGTGGAGGTGGTGATGCTCATGAAGGATCTTCATCTCAGAAGAGAATGGGAAGAGGGAAGATCGAGATCAAGCGAATCGAGAACACGACGAATCGGCAGGTAACGTTCTGTAAGAGGCGGAACGGATTGCTGAAGAAAGCTTATGAACTGTCTGTCCTTTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCAGCCGTGGCCGTTTGTATGAATATGCTAACAACAGTGTTAGGGCAACAATTGAAAGGTATAAAAAAGCATATTCTACTTCCACAAGCGCAGAATCTGTGTCTGAAGCTAACACGCAGTATTACCAGCAAGAATCAACCAAAATGAAAAGACAAATCCGAGAGATTCAAAATCTAAACAGGCACATCCTTGGTGAAGCACTCAGCACTCTAAGCCTTAAGGAACTAAAGAACCTTGAAAGCAGATTGGAGAAAGGCTTAAGCAGAGTCAGATCCAGAAAGCATGAAACATTGTTAGCTGAAGTTGAATTCATGCAAAAACGGGAAATTGAGCTGCAAAACCACAACAATTTTCTGAGAGCAAAGATAGGTGAATTTGAGAGAGCTCAACAACAACAACAACATCAACAGGAACAAAATTTTTTAATGGCACCTGGTGGAGGAACTATATGTGACACAATTGCATCTTCACAACAACCACCACCACCATTTGATCGCAACTTCTTTTAG 720 0.4194 MELPHQSGGGGDAHEGSSSQKRMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKAYSTSTSAESVSEANTQYYQQESTKMKRQIREIQNLNRHILGEALSTLSLKELKNLESRLEKGLSRVRSRKHETLLAEVEFMQKREIELQNHNNFLRAKIGEFERAQQQQQHQQEQNFLMAPGGGTICDTIASSQQPPPPFDRNFF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26234487g00393 239 Gene3D - 35 107 IPR036879 GO:0003677|GO:0046983
Arst26234487g00393 239 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Arst26234487g00393 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
Arst26234487g00393 239 MobiDBLite consensus disorder prediction 1 29 - -
Arst26234487g00393 239 FunFam agamous-like MADS-box protein AGL11 35 118 - -
Arst26234487g00393 239 Coils Coil 112 132 - -
Arst26234487g00393 239 CDD MADS_MEF2_like 24 93 IPR033896 GO:0000977|GO:0045944
Arst26234487g00393 239 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
Arst26234487g00393 239 Pfam K-box region 107 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst26234487g00393 239 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Arst26234487g00393 239 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Arst26234487g00393 239 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Arst26234487g00393 239 ProSitePatterns MADS-box domain signature. 25 79 IPR002100 GO:0003677|GO:0046983
Arst26234487g00393 239 Coils Coil 143 163 - -
Arst26234487g00393 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 23 205 - -
Arst26234487g00393 239 SUPERFAMILY SRF-like 24 101 IPR036879 GO:0003677|GO:0046983
Arst26234487g00393 239 ProSiteProfiles K-box domain profile. 109 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26234487g00393 10 239 MADS-box Gene Family AT2G42830 65.517 7.10e-105 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst26234487g00393 K-box 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26234487g00393 K09264 - gmx:100782733 335.88