Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst26234487g00393 | ATGGAGCTTCCACATCAAAGTGGTGGAGGTGGTGATGCTCATGAAGGATCTTCATCTCAGAAGAGAATGGGAAGAGGGAAGATCGAGATCAAGCGAATCGAGAACACGACGAATCGGCAGGTAACGTTCTGTAAGAGGCGGAACGGATTGCTGAAGAAAGCTTATGAACTGTCTGTCCTTTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCAGCCGTGGCCGTTTGTATGAATATGCTAACAACAGTGTTAGGGCAACAATTGAAAGGTATAAAAAAGCATATTCTACTTCCACAAGCGCAGAATCTGTGTCTGAAGCTAACACGCAGTATTACCAGCAAGAATCAACCAAAATGAAAAGACAAATCCGAGAGATTCAAAATCTAAACAGGCACATCCTTGGTGAAGCACTCAGCACTCTAAGCCTTAAGGAACTAAAGAACCTTGAAAGCAGATTGGAGAAAGGCTTAAGCAGAGTCAGATCCAGAAAGCATGAAACATTGTTAGCTGAAGTTGAATTCATGCAAAAACGGGAAATTGAGCTGCAAAACCACAACAATTTTCTGAGAGCAAAGATAGGTGAATTTGAGAGAGCTCAACAACAACAACAACATCAACAGGAACAAAATTTTTTAATGGCACCTGGTGGAGGAACTATATGTGACACAATTGCATCTTCACAACAACCACCACCACCATTTGATCGCAACTTCTTTTAG | 720 | 0.4194 | MELPHQSGGGGDAHEGSSSQKRMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKAYSTSTSAESVSEANTQYYQQESTKMKRQIREIQNLNRHILGEALSTLSLKELKNLESRLEKGLSRVRSRKHETLLAEVEFMQKREIELQNHNNFLRAKIGEFERAQQQQQHQQEQNFLMAPGGGTICDTIASSQQPPPPFDRNFF | 239 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst26234487g00393 | 239 | Gene3D | - | 35 | 107 | IPR036879 | GO:0003677|GO:0046983 | |
Arst26234487g00393 | 239 | SMART | madsneu2 | 23 | 82 | IPR002100 | GO:0003677|GO:0046983 | |
Arst26234487g00393 | 239 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 32 | 79 | IPR002100 | GO:0003677|GO:0046983 | |
Arst26234487g00393 | 239 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Arst26234487g00393 | 239 | FunFam | agamous-like MADS-box protein AGL11 | 35 | 118 | - | - | |
Arst26234487g00393 | 239 | Coils | Coil | 112 | 132 | - | - | |
Arst26234487g00393 | 239 | CDD | MADS_MEF2_like | 24 | 93 | IPR033896 | GO:0000977|GO:0045944 | |
Arst26234487g00393 | 239 | ProSiteProfiles | MADS-box domain profile. | 23 | 83 | IPR002100 | GO:0003677|GO:0046983 | |
Arst26234487g00393 | 239 | Pfam | K-box region | 107 | 193 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Arst26234487g00393 | 239 | PRINTS | MADS domain signature | 60 | 81 | IPR002100 | GO:0003677|GO:0046983 | |
Arst26234487g00393 | 239 | PRINTS | MADS domain signature | 45 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Arst26234487g00393 | 239 | PRINTS | MADS domain signature | 25 | 45 | IPR002100 | GO:0003677|GO:0046983 | |
Arst26234487g00393 | 239 | ProSitePatterns | MADS-box domain signature. | 25 | 79 | IPR002100 | GO:0003677|GO:0046983 | |
Arst26234487g00393 | 239 | Coils | Coil | 143 | 163 | - | - | |
Arst26234487g00393 | 239 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 23 | 205 | - | - | |
Arst26234487g00393 | 239 | SUPERFAMILY | SRF-like | 24 | 101 | IPR036879 | GO:0003677|GO:0046983 | |
Arst26234487g00393 | 239 | ProSiteProfiles | K-box domain profile. | 109 | 199 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst26234487g00393 | 10 | 239 | MADS-box Gene Family | AT2G42830 | 65.517 | 7.10e-105 | 301 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Arst26234487g00393 | K-box | 2.1e-24 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst26234487g00393 | K09264 | - | gmx:100782733 | 335.88 |