Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26234487g00228 ATGATTTTTCGGAAGTTGCAAGTTGCAAGTCCACACTCCTCTGACTCTGAAACACAAACCATGATGGCAACACTCCTCAGAAAACTCTGCGTTTGCAGTGAAACGGCGTCGTATAACAACCACCGACCCTCATCCGAAGCTGCTGCTTCTTCAGGTTCGTTACTGGAATCACTTCCAAGCGAGATTGTGATGCAGATCGTACGGTTATTGGGCCCAAAGCAGGCCGCACAGCTCAGCGTGGTTAACAGAAAGTGGCGATCCCTCATCTCCGATAACGAACTCTGGGCCCACTTTCTTGAGGTCCACAATCCTCAGCCATGGGATTCCGTGCTTTTCTCCGAGACTTTTCTGGCCTCTGCTTACCCTCTTCTTCCTCTTCCAACCTCAGTTGCTGAGATTCCATCTGTGTCATTCAAGCAAGTTTATGGCCAGCGTGCAAGACTGCCTTGTTCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAATATGGTTGGAGCACACTCCCTTGTCCATCATGGCGGTCAGCAACCTTTCTGGAATTTGGTAATGTGGAAACGCCAATATACACCAGACTCAGACACTTTTTTTGGACTATTTATAGCAGGATGAAGGCGAAACCAAGTTCTCAACCAGTTGTTGTTTCTATACCAATATGCCACTATGATGATACTGAATCAGCCAAAGCCTCAAGGCGGCAGCTTAAGGAAGCAATCTATACTGCCCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTAAATCAGGCAGTTCTAGCTCTGTTTGCTGCCAAACAAACTTCTGGAATAGTTGTGAATATAGGTTTTCAAGTCACATCTGTTGTTCCAATTTTAAATGGCAAAGTGATGCGAAAAGTGGGTGTGGAGGTTGTGGGGTTGGGAGCCCTAAAGCTCACTGGATTCCTTAGAGAACAAATGCAACAGAATAACATGAGTTTTGAATCAATGTACACTGTTCGAATGCTGAAAGAGAAGCTATGCTATGTTGCTATTGATTATGAAGCAGAGCTATCTAAAGATACACAAGCATCATTTGAAGCTGCAGGAGAAGGATGGTTTATACTTAAAAAAGAGCGCTTTCAAACCGGAGAGATCTTATTCCAGCCACGTCTTGCCGGAGTACGAGCAATGGGTTTGCACCAGGCCGTCGCTCTGTGCATCGACCATTGCCATTCTGCAGAATTAACCGCGGACACGAATTGGTTTAAGACCGTAGTCTTATGTGGGGGCAGTGCATGTTTACCAGGTTTGGCAGAAAGATTAGAGAAAGAACTTCATGCCTTGGTTGATCCCAACCTGTCAGACAGAATCACAGTCATACCTCCTCCATATGGCGCGGATACGGCATGGTTTGGAGCAAAGATGATTGGCAATTTAAGTACCTTTCCCGGTCCATGGTGTATAACAAAGAAGCAGTTCCGTCAAAAGCATAAAACTAATCGGATATGGTGA 1470 0.4551 MIFRKLQVASPHSSDSETQTMMATLLRKLCVCSETASYNNHRPSSEAAASSGSLLESLPSEIVMQIVRLLGPKQAAQLSVVNRKWRSLISDNELWAHFLEVHNPQPWDSVLFSETFLASAYPLLPLPTSVAEIPSVSFKQVYGQRARLPCSVIIDGGSGYCKYGWSTLPCPSWRSATFLEFGNVETPIYTRLRHFFWTIYSRMKAKPSSQPVVVSIPICHYDDTESAKASRRQLKEAIYTALFDMNVPAVCALNQAVLALFAAKQTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREQMQQNNMSFESMYTVRMLKEKLCYVAIDYEAELSKDTQASFEAAGEGWFILKKERFQTGEILFQPRLAGVRAMGLHQAVALCIDHCHSAELTADTNWFKTVVLCGGSACLPGLAERLEKELHALVDPNLSDRITVIPPPYGADTAWFGAKMIGNLSTFPGPWCITKKQFRQKHKTNRIW 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26234487g00228 489 SMART fbox_2 58 98 IPR001810 GO:0005515
Arst26234487g00228 489 SUPERFAMILY Actin-like ATPase domain 266 480 IPR043129 -
Arst26234487g00228 489 Gene3D - 256 454 - -
Arst26234487g00228 489 CDD NBD_sugar-kinase_HSP70_actin 152 296 - -
Arst26234487g00228 489 SMART actin_3 149 487 IPR004000 -
Arst26234487g00228 489 Gene3D - 192 483 - -
Arst26234487g00228 489 Pfam Actin 224 480 IPR004000 -
Arst26234487g00228 489 PANTHER ACTIN 197 483 IPR004000 -
Arst26234487g00228 489 SUPERFAMILY F-box domain 42 145 IPR036047 GO:0005515
Arst26234487g00228 489 ProSiteProfiles F-box domain profile. 52 98 IPR001810 GO:0005515
Arst26234487g00228 489 SUPERFAMILY Actin-like ATPase domain 152 271 IPR043129 -
Arst26234487g00228 489 Gene3D Actin; Chain A, domain 4 299 382 - -
Arst26234487g00228 489 Pfam F-box-like 56 97 IPR001810 GO:0005515
Arst26234487g00228 489 Gene3D - 44 121 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26234487g00228 198 481 Cytoskeleton Gene Families AT3G12110 30.375 1.30e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26234487g00228 K16616 - gmx:100804254 678.707